Philippe Collas

Image of Philippe Collas
Norwegian version of this page
Phone +47-22851066
Room 2250
Username
Visiting address Sognsvannsveien 9 Domus Medica 0372 OSLO
Postal address Postboks 1112 Blindern 0317 OSLO

Academic interests

  • Reprogramming of nuclear function
  • Epigenetic determination of lineage commitment in mesenchymal stem cells
  • Organization and dynamics of the cell nucleus

Courses taught

  • MF9390: ”Epigenetics, Development and Disease”

Background

1991:  Ph.D., University of Massachusetts, Amherst, MA, USA.

Area: embryo cloning

URL: www.collaslab.com

Curriculum Vitae (pdf)

Awards

  • Elected member of the Norwegian Academy of Sciences

Positions held

  • 1991 1993: Research Scientist, Genmark, Inc., Salt Lake City, UT, USA
  • 1992 2004: Adjunct Professor, University of Massachusetts, Amherst, MA, USA
  • 1993 1995: Research Associate, Dept. of Biology, Amherst College, Amherst, MA, USA
  • 1995-1998: Scientist, Dept. of Biochemistry, Norwegian College of Veterinary Medicine, Oslo
  • 1999-2003: Senior Research Scientist, Institute of Medical Biochemistry, University of Oslo; Fellow of the Norwegian Cancer Society 
  • 2003-present: Professor, Institute of Basic Medical Sciences, Dep. of Biochemistry, University of Oslo
  • 2009-present: Senior Scientist II, Rikshospitalet University Hospital, Oslo
Tags: Stem cells, Biochemistry, Life science

Publications

  • Delbarre, Erwan; Ivanauskiene, Kristina; Spirkoski, Jane; Shah, Akshay; Vekterud, Kristin; Moskaug, Jan Øivind; Bøe, Stig Ove; Wong, Lee H.; Küntziger, Thomas M. & Collas, Philippe (2017). PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX. Genome Research.  ISSN 1088-9051.  27(6), s 913- 921 . doi: 10.1101/gr.215830.116
  • Guénantin, Anne-Claire; Briand, Nolwenn; Capel, Emilie; Dumont, Florent; Morichon, Romain; Provost, Claire; Stillitano, Francesca; Jeziorowska, Dorota; Siffroi, Jean-Pierre; Hajjar, Roger J.; Fève, Bruno; Hulot, Jean-Sébastien; Collas, Philippe; Capeau, Jacqueline & Vigouroux, Corinne (2017). Functional human beige adipocytes from induced pluripotent stem cells. Diabetes.  ISSN 0012-1797.  66(6), s 1470- 1478 . doi: 10.2337/db16-1107
  • Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas M. (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle.  ISSN 1538-4101.  16(10), s 947- 956 . doi: 10.1080/15384101.2017.1310350
  • Paulsen, Jonas; Sekelja, Monika; Oldenburg, Anja; Barateau, Alice; Briand, Nolwenn; Delbarre, Erwan; Shah, Akshay; Sørensen, Anita Løvstad; Vigouroux, Corinne; Buendia, Brigitte & Collas, Philippe (2017). Chrom3D: Three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts. Genome Biology.  ISSN 1465-6906.  18:21, s 1- 15 . doi: 10.1186/s13059-016-1146-2
  • Buemo, Carla; Gambini, Andres; Moro, Lucia Natalia; Hiriart, Maria Ines; Fernandez-Martin, Rafael; Collas, Philippe & Salamone, Daniel Felipe (2016). Embryo aggregation in pig improves cloning efficiency and embryo quality. PLoS ONE.  ISSN 1932-6203.  11(2) . doi: 10.1371/journal.pone.0146390
  • Collas, Philippe & Oldenburg, Anja (2016). Mapping Nuclear Lamin-Genome Interactions by Chromatin Immunoprecipitation of Nuclear Lamins. Methods in Molecular Biology.  ISSN 1064-3745.  s 315- 324 . doi: 10.1007/978-1-4939-3530-7_20
  • Legartová, Soña; Sehnalová, Petra; Malyšková, Barbora; Küntziger, Thomas M.; Collas, Philippe; Cmarko, Dušan; Raška, Ivan; Sorokin, Dmitry; Kozubek, Stanislav & Bártová, Eva (2016). Localized Movement and Levels of 53BP1 Protein Are Changed by g-irradiation in PML Deficient Cells. Journal of Cellular Biochemistry.  ISSN 0730-2312.  117(11), s 2583- 2596 . doi: 10.1002/jcb.25551
  • Lindstad, Torstein; Qu, Su; Sikkeland, Jørgen; Jin, Yang; Kristian, Alexandr; Mælandsmo, Gunhild; Collas, Philippe & Saatcioglu, Fahri (2016). STAMP2 is required for human adipose-derived stem cell differentiation and adiposite-facilitated prostrate cancer grown in vivo.. OncoTarget.  ISSN 1949-2553. . doi: 10.18632/oncotarget.11131
  • Marstad, Anne; Landsverk, Ole J. B.; Strømme, Olaf; Otterlei, Marit; Collas, Philippe; Sundan, Anders & Brede, Gaute (2016). A-kinase anchoring protein AKAP95 is a novel regulator of ribosomal RNA synthesis. The FEBS Journal.  ISSN 1742-464X.  283(4), s 757- 770 . doi: 10.1111/febs.13630
  • Sekelja, Monika; Paulsen, Jonas & Collas, Philippe (2016). 4D nucleomes in single cells: What can computational modeling reveal about spatial chromatin conformation?. Genome Biology.  ISSN 1465-6906.  17:54 . doi: 10.1186/s13059-016-0923-2
  • Vanhove, Jolien; Pistoni, Mariaelena; Welters, Marc; Eggermont, Kristel; Vanslembrouck, Veerle; Helsen, Nicky; Boon, Ruben; Najimi, Mustapha; Sokal, Etienne; Collas, Philippe; Voncken, J. Willem & Verfaillie, Catherine M. (2016). H3K27me3 Does Not Orchestrate the Expression of Lineage-Specific Markers in hESC-Derived Hepatocytes In Vitro. Stem Cell Reports.  ISSN 2213-6711.  7(2), s 192- 206 . doi: 10.1016/j.stemcr.2016.06.013
  • Voon, Hsiao P.J.; Collas, Philippe & Wong, Lee H. (2016). Compromised telomeric heterochromatin promotes ALTernative lengthening of telomeres. Trends in Cancer.  ISSN 2405-8033.  2(3), s 114- 116 . doi: 10.1016/j.trecan.2016.02.003
  • Chang, Fiona T.M.; Chan, F. Lyn; McGhie, James D.R.; Udugama, Maheshi; Mayne, Lynne; Collas, Philippe; Mann, Jeffrey R. & Wong, Lee H. (2015). CHK1-driven histone H3.3 serine 31 phosphorylation is important for chromatin maintenance and cell survival in human ALT cancer cells. Nucleic Acids Research.  ISSN 0305-1048.  43(5), s 2603- 2614 . doi: 10.1093/nar/gkv104
  • Lund, Eivind Gard; Collas, Philippe & Delbarre, Erwan (2015). Transcription outcome of promoters enriched in histone variant h3.3 defined by positioning of H3.3 and local chromatin marks. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  460(2), s 345- 353 . doi: 10.1016/j.bbrc.2015.03.037
  • Lund, Eivind Gard; Duband-Goulet, Isabelle; Oldenburg, Anja; Buendia, Brigitte & Collas, Philippe (2015). Distinct features of lamin A-interacting chromatin domains mapped by Chip-sequencing from sonicated or micrococcal nuclease-digested chromatin. Nucleus.  ISSN 1949-1034.  6(1), s 30- 39 . doi: 10.4161/19491034.2014.990855
  • Paulsen, Jonas; Gramstad, Odin & Collas, Philippe (2015). Manifold Based Optimization for Single-Cell 3D Genome Reconstruction. PloS Computational Biology.  ISSN 1553-734X.  11(8) . doi: 10.1371/journal.pcbi.1004396 Full text in Research Archive
  • Reppe, Sjur; Noer, Agate; Grimholt, Runa Marie; Halldorsson, Bjarni V; Medina-Gomez, Carolina; Gautvik, Vigdis Teig; Olstad, Ole Kristoffer; Datta, Harish K; Berg, Jens Petter; Estrada, Karol; Hofman, Albert; Uitterlinden, André G.; Rivadeneira, Fernando; Lyle, Robert; Collas, Philippe & Gautvik, Kaare M (2015). Methylation of bone SOST, its mRNA, and serum sclerostin levels correlate strongly with fracture risk in postmenopausal women. Journal of Bone and Mineral Research.  ISSN 0884-0431.  30(2), s 249- 256 . doi: 10.1002/jbmr.2342
  • Rønningen, Torunn; Shah, Akshay; Oldenburg, Anja; Vekterud, Kristin; Delbarre, Erwan; Moskaug, Jan Øivind & Collas, Philippe (2015). Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B. Genome Research.  ISSN 1088-9051.  25(12), s 1825- 1835 . doi: 10.1101/gr.193748.115
  • Rønningen, Torunn; Shah, Akshay; Reiner, Andrew Henry; Collas, Philippe & Moskaug, Jan Øivind (2015). Epigenetic priming of inflammatory response genes by high glucose in adipose progenitor cells. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  467(4), s 979- 986 . doi: 10.1016/j.bbrc.2015.10.030
  • Taghdouini, Adil El; Sørensen, Anita Løvstad; Reiner, Andrew Henry; Coll, Mar; Verhulst, Stefaan; Mannaerts, Inge; Øie, Cristina Ionica; Smedsrød, Bård; Najimi, Mustapha; Sokal, Etienne; Luttun, Aernout; Sancho-Bru, Pau; Collas, Philippe & Grunsven, Leo A van (2015). Genome-wide analysis of DNA methylation and gene Expression patterns in purified, uncultures human liver cells and activated hepatic stellate cells. OncoTarget.  ISSN 1949-2553.  6(29), s 26729- 26745 . doi: 10.18632/oncotarget.4925 Full text in Research Archive
  • Udugama, Maheshi; Chang, Fiona T.M.; Chan, F. Lyn; Tang, Michelle C.; Pickett, Hilda A.; McGhie, James D.R.; Mayne, Lynne; Collas, Philippe; Mann, Jeffrey R. & Wong, Lee H. (2015). Histone variant H3.3 provides the heterochromatic H3 lysine 9 tri-methylation mark at telomeres. Nucleic Acids Research.  ISSN 0305-1048.  43(21), s 10227- 10237 . doi: 10.1093/nar/gkv847
  • Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn & Alestrøm, Peter (2014). Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. PLoS ONE.  ISSN 1932-6203.  9(2) . doi: 10.1371/journal.pone.0089158
  • Carriere, Audrey; Jeanson, Yannick; Berger-Muller, Sandra; André, Mireille; Chenouard, Vanessa; Arnaud, Emmanuelle; Barreau, Corinne; Walther, Romy; Galinier, Anne; Wdziekonski, Brigitte; Villageois, Phi; Louche, Katie; Collas, Philippe; Moro, Cédric; Dani, Christian; Villarroya, Francesc & Casteilla, Louis (2014). Browning of white adipose cells by Intermediate metabolites: an adaptive mechanism to alleviate redox pressure. Diabetes.  ISSN 0012-1797.  63(10), s 3253- 3265 . doi: 10.2337/db13-1885
  • Collas, Philippe; Lund, Eivind Gard & Ruppelt, Anja (2014). Closing the (nuclear) envelope on the genome: How nuclear lamins interact with promoters and modulate gene expression. Bioessays.  ISSN 0265-9247.  36(1), s 75- 83 . doi: 10.1002/bies.201300138
  • Ivanauskiene, Kristina; Delbarre, Erwan; McGhie, James; Küntziger, Thomas Michel; Wong, Lee-Jun C. & Collas, Philippe (2014). The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity. Genome Research.  ISSN 1088-9051.  24(10), s 1584- 1594 . doi: 10.1101/gr.173831.114
  • Lund, Eivind Gard; Ruppelt, Anja & Collas, Philippe (2014). Enriched domain detector: A program for detection of wide genomic enrichment domains robust against local variations. Nucleic Acids Research.  ISSN 0305-1048.  42(11), s e92 . doi: 10.1093/nar/gku324
  • Oldenburg Ruppelt, Anja; Delbarre, Erwan; Thiede, Bernd; Vigouroux, Corinne & Collas, Philippe (2014). Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Human Molecular Genetics.  ISSN 0964-6906.  23(5), s 1151- 1162 . doi: 10.1093/hmg/ddt509
  • Shah, Akshay; Oldenburg, Anja & Collas, Philippe (2014). A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules. BMC Genomics.  ISSN 1471-2164.  15(1) . doi: 10.1186/1471-2164-15-1186
  • Vadrot, Nathalie; Duband-Goulet, Isabelle; Cabet, Eva; Attanda, Wikayatou; Barateau, Alice; Vicart, Patrick; Gerbal, Fabien; Briand, Nolwenn; Vigouroux, Corinne; Oldenburg, Anja; Lund, Eivind Gard; Collas, Philippe & Buendia, Brigitte (2014). The p.R482W substitution in a-type lamins deregulates SREBP1 activity in dunnigan-type familial partial lipodystrophy. Human Molecular Genetics.  ISSN 0964-6906.  24(7), s 2096- 2109 . doi: 10.1093/hmg/ddu728
  • Østrup, Olga; Reiner, Andrew Henry; Alestrøm, Peter & Collas, Philippe (2014). The specific alteration of histone methylation profiles by DZNep during early zebrafish development. Biochimica et Biophysica Acta.  ISSN 0006-3002.  1839(11), s 1307- 1315 . doi: 10.1016/j.bbagrm.2014.09.013
  • Aanes, Håvard; Collas, Philippe & Alestrøm, Peter (2013). Transcriptome dynamics and diversity in the early zebrafish embryo. Briefings in Functional Genomics & Proteomics.  ISSN 1473-9550. . doi: 10.1093/bfgp/elt049
  • Aanes, Håvard; Østrup, Olga; Andersen, Ingrid Stavenes; Moen, Lars Fredrik; Mathavan, Sinnakaruppan; Collas, Philippe & Alestrøm, Peter (2013). Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish. BMC Genomics.  ISSN 1471-2164.  14 . doi: 10.1186/1471-2164-14-331
  • Andersen, Ingrid Stavenes; Lindeman, Leif Christopher; Reiner, Andrew Henry; Østrup, Olga; Aanes, Håvard; Alestrøm, Peter & Collas, Philippe (2013). Epigenetic Marking of the Zebrafish Developmental Program. Current Topics in Developmental Biology.  ISSN 0070-2153.  104, s 85- 112 . doi: 10.1016/B978-0-12-416027-9.00003-6
  • Boulland, Jean-Luc; Mastrangelopoulou, Maria; Boqest, Andrew Craig; Jakobsen, Rune Bruhn; Noer, Agate; Glover, Joel & Collas, Philippe (2013). Epigenetic Regulation of Nestin Expression during Neurogenic Differentiation of Adipose Tissue Stem Cells. Stem Cells and Development.  ISSN 1547-3287.  22(7), s 1042- 1052 . doi: 10.1089/scd.2012.0560
  • Collas, Philippe & Eskeland, Ragnhild (2013). Oslo Epigenetics Symposium 2012 Oslo, Norway, 8-9 November 2012. Epigenomics.  ISSN 1750-1911.  5(1), s 29- 32 . doi: 10.2217/EPI.12.76
  • Delbarre, Erwan; Ivanauskiene, Kristina; Küntziger, Thomas Michel & Collas, Philippe (2013). DAXX-dependent supply of soluble (H3.3-H4) dimers to PML bodies pending deposition into chromatin. Genome Research.  ISSN 1088-9051.  23(3), s 440- 451 . doi: 10.1101/gr.142703.112
  • Hemmingsen, Mette; Vedel, Søren; Skafte-Pedersen, Peder; Sabourin, David; Collas, Philippe; Bruus, Henrik & Dufva, Martin (2013). The Role of Paracrine and Autocrine Signaling in the Early Phase of Adipogenic Differentiation of Adiposederived Stem Cells. PLoS ONE.  ISSN 1932-6203.  8(5) . doi: 10.1371/journal.pone.0063638
  • Herlofsen, Sarah; Bryne, Jan Christian; Høiby, Torill; Wang, Li; Issner, Robbyn; Zhang, XL; Coyne, Michael J; Boyle, P; Gu, Hongcang; Meza-Zepeda, Leonardo Andrés; Collas, Philippe; Mikkelsen, Tarjei S. & Brinchmann, Jan E. (2013). Genome-wide map of quantified epigenetic changes during in vitro chondrogenic differentiation of primary human mesenchymal stem cells. BMC Genomics.  ISSN 1471-2164.  14 . doi: 10.1186/1471-2164-14-105
  • Herrmann, Doris; Dahl, John Arne; Lucas-Hahn, Andrea; Collas, Philippe & Niemann, Heiner (2013). Histone modifications and mRNA expression in the inner cell mass and trophectoderm of bovine blastocysts. Epigenetics.  ISSN 1559-2294.  8(3), s 281- 289 . doi: 10.4161/epi.23899
  • Lund, Eivind Gard & Collas, Philippe (2013). Nuclear lamins Making contacts with promoters. Nucleus.  ISSN 1949-1034.  4(6), s 424- 430 . doi: 10.4161/nucl.26865
  • Lund, Eivind Gard; Oldenburg Ruppelt, Anja; Delbarre, Erwan; Freberg, Christel Taranger; Duband-Goulet, Isabelle; Eskeland, Ragnhild; Buendia, Brigitte & Collas, Philippe (2013). Lamin A/C-promoter interactions specify chromatin state-dependent transcription outcomes. Genome Research.  ISSN 1088-9051.  23(10), s 1580- 1589 . doi: 10.1101/gr.159400.113
  • Østrup, Olga; Andersen, Ingrid Stavenes & Collas, Philippe (2013). Chromatin-linked determinants of zygotic genome activation. Cellular and Molecular Life Sciences (CMLS).  ISSN 1420-682X.  70(8), s 1425- 1437 . doi: 10.1007/s00018-012-1143-x
  • Østrup, Olga; Olbricht, Gayla; Østrup, Esben; Hyttel, Poul; Collas, Philippe & Cabot, Ryan (2013). RNA Profiles of Porcine Embryos during Genome Activation Reveal Complex Metabolic Switch Sensitive to In Vitro Conditions. PLoS ONE.  ISSN 1932-6203.  8(4) . doi: 10.1371/journal.pone.0061547
  • Andersen, Ingrid Stavenes; Østrup, Olga; Lindeman, Leif Christopher; Aanes, Håvard; Reiner, Andrew Henry; Mathavan, Sinnakaruppan; Alestrøm, Peter & Collas, Philippe (2012). Epigenetic complexity during the zebrafish mid-blastula transition. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  417(4), s 1139- 1144 . doi: 10.1016/j.bbrc.2011.12.077
  • Andersen, Ingrid; Reiner, Andrew Henry; Aanes, Håvard; Alestrøm, Peter & Collas, Philippe (2012). Developmental features of DNA methylation during activation of the embryonic zebrafish genome. Genome Biology.  ISSN 1465-6906.  13, s R65
  • Boqest, Andrew Craig & Collas, Philippe (2012). Obtaining freshly isolated and cultured mesenchymal stem cells from human adipose tissue , In Orry Andrew J. W. & Abagyan Ruben (ed.),  Methods in Molecular Biology.  Humana Press.  kapittel 15.  s 269 - 278
  • Lindeman, Leif Christopher; Andersen, Ingrid Stavenes; Reiner, Andrew Henry; Li, N; Aanes, Håvard; Østrup, Olga; Winata, Cecilia L.; Mathavan, Sinnakaruppan; Müller, F; Alestrøm, Peter & Collas, Philippe (2011). Prepatterning of developmental gene expression by modified histones before zygotic genome activation. Developmental Cell.  ISSN 1534-5807.  (6), s 993- 1004 . doi: 10.1016/j.devcel.2011.10.008
  • Østrup, Olga; Hyttel, Poul; Klærke, Dan A. & Collas, Philippe (2011). Remodeling of ribosomal genes in somatic cells by Xenopus egg extract. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  412(3), s 487- 493 . doi: 10.1016/j.bbrc.2011.07.128
  • Aanes, Håvard; Winata, Cecilia L.; Lin, Chi Ho; Chen, Jieqi P; Srinivasan, Kandhadayar G; Lee, Serene G; Lim, Adrian; Hajan, Hajira Shreen; Collas, Philippe; Bourque, Guillaume; Gong, Zhiyuan; Korzh, Vladimir; Alestrøm, Peter & Mathavan, Sinnakaruppan (2011). Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition. Genome Research.  ISSN 1088-9051.  21(8), s 1328- 1338 . doi: 10.1101/gr.116012.110
  • Collas, Philippe (2011). A chromatin immunoprecipitation protocol for small cell numbers. Methods in Molecular Biology.  ISSN 1064-3745.  791, s 179- 193 . doi: 10.1007/978-1-61779-316-5_14
  • Collas, Philippe (2011). Notice of redundant publication. Nuclear reprogramming in cell-free extracts. Philosophical Transactions of the Royal Society of London. Biological Sciences.  ISSN 0962-8436.  366, s 3162 . doi: 10.1098/rstb.2011.0257
  • Kuntziger, Thomas Michel; Landsverk, Helga Bjarnason; Collas, Philippe & Syljuåsen, Randi (2011). Protein phosphatase 1 regulators in DNA damage signaling. Cell Cycle.  ISSN 1538-4101.  10(9), s 1356- 1362 . doi: 10.4161/cc.10.9.15442
  • Ugland, Hege Katrin; Naderi, Soheil; Brech, Andreas; Collas, Philippe & Blomhoff, Heidi Kiil (2011). cAMP induces autophagy via a novel pathway involving ERK, cyclin E and Beclin 1. Autophagy.  ISSN 1554-8627.  7(10), s 1199- 1211 . doi: 10.4161/auto.7.10.16649
  • Barrand, Sanna Kristiina; Andersen, Ingrid Stavenes & Collas, Philippe (2010). Promoter-exon relationship of H3 lysine 9, 27, 36 and 79 methylation on pluripotency-associated genes. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  401(4), s 611- 617 . doi: 10.1016/j.bbrc.2010.09.116
  • Barrand, Sanna Kristiina & Collas, Philippe (2010). Chromatin states of core pluripotency-associated genes in pluripotent, multipotent and differentiated cells. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  391(1), s 762- 767 . doi: 10.1016/j.bbrc.2009.11.134
  • Choi, Yu Suk; Dusting, Gregory J.; Stubbs, Samantha; Arunothayaraj, Sandeep; Han, Xiao Lian; Collas, Philippe; Morrison, Wayne A. & Dilley, Rodney J. (2010). Differentiation of human adipose-derived stem cells into beating cardiomyocytes. Journal of Cellular and Molecular Medicine (Print).  ISSN 1582-1838.  14(4), s 878- 889 . doi: 10.1111/j.1582-4934.2010.01009.x
  • Collas, Philippe (2010). Programming differentiation potential in mesenchymal stem cells. Epigenetics.  ISSN 1559-2294.  5(6) . doi: 10.4161/epi.5.6.12517
  • Collas, Philippe (2010). The Current State of Chromatin Immunoprecipitation. Molecular Biotechnology.  ISSN 1073-6085.  45(1), s 87- 100 . doi: 10.1007/s12033-009-9239-8
  • Dahl, John Arne; Reiner, Andrew Henry; Klungland, Arne; Wakayama, Teruhiko & Collas, Philippe (2010). Histone H3 Lysine 27 Methylation Asymmetry on Developmentally-Regulated Promoters Distinguish the First Two Lineages in Mouse Preimplantation Embryos. PLoS ONE.  ISSN 1932-6203.  5(2) . doi: 10.1371/journal.pone.0009150
  • Delbarre, Erwan; Jacobsen, Bente Marie Berntsen; Reiner, Andrew Henry; Sørensen, Anita Løvstad; Kuntziger, Thomas Michel & Collas, Philippe (2010). Chromatin Environment of Histone Variant H3.3 Revealed by Quantitative Imaging and Genome-scale Chromatin and DNA Immunoprecipitation. Molecular Biology of the Cell.  ISSN 1059-1524.  21(11), s 1872- 1884 . doi: 10.1091/mbc.E09-09-0839
  • Landsverk, Helga Bjarnason; Mora-Bermúdez, Felipe; Landsverk, Ole J. B.; Hasvold, Grete; Naderi, Soheil; Bakke, Oddmund; Ellenberg, Jan; Collas, Philippe; Syljuåsen, Randi & Kuntziger, Thomas Michel (2010). The protein phosphatase 1 regulator PNUTS is a new component of the DNA damage response. EMBO Reports.  ISSN 1469-221X.  11(11), s 868- 875 . doi: 10.1038/embor.2010.134
  • Lindeman, Leif Christopher; Reiner, Andrew Henry; Mathavan, Sinnakaruppan; Alestrøm, Peter & Collas, Philippe (2010). Tiling Histone H3 Lysine 4 and 27 Methylation in Zebrafish Using High-Density Microarrays. PLoS ONE.  ISSN 1932-6203.  5(12) . doi: 10.1371/journal.pone.0015651
  • Lindeman, Leif Christopher; Winata, Cecilia L.; Aanes, Håvard; Mathavan, Sinnakaruppan; Aleström, Peter & Collas, Philippe (2010). Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos. International Journal of Developmental Biology.  ISSN 0214-6282.  54(5), s 803- 813 . doi: 10.1387/ijdb.103081ll
  • Sørensen, Anita Løvstad; Barrand, Sanna Kristiina; West, Franklin D.; Vekterud, Kristin; Boquest, Andrew Craig; Åhrlund-Richter, Lars; Stice, Steve L. & Collas, Philippe (2010). Lineage-Specific Promoter DNA Methylation Patterns Segregate Adult Progenitor Cell Types. Stem Cells and Development.  ISSN 1547-3287.  19(8), s 1257- 1266 . doi: 10.1089/scd.2009.0309
  • Sørensen, Anita Løvstad; Jacobsen, Bente Marie Berntsen; Reiner, Andrew Henry; Andersen, Ingrid Stavenes & Collas, Philippe (2010). Promoter DNA Methylation Patterns of Differentiated Cells Are Largely Programmed at the Progenitor Stage. Molecular Biology of the Cell.  ISSN 1059-1524.  21(12), s 2066- 2077 . doi: 10.1091/mbc.E10-01-0018
  • Lindeman, Leif Christopher; Vogt-Kielland, Linn; Alestrøm, Peter & Collas, Philippe (2009). Fish´n ChIPs: Chromatin immunoprecipitation in the zebrafish embryo. Methods in Molecular Biology.  ISSN 1064-3745.  567, s 75- 86
  • Collas, Philippe (2009). Epigenetic states in stem cells. Biochimica et Biophysica Acta - General Subjects.  ISSN 0304-4165.  1790(9), s 900- 905 . doi: 10.1016/j.bbagen.2008.10.006
  • Collas, Philippe (2009). The state-of-the-art of chromatin immunoprecipiation. Methods in Molecular Biology.  ISSN 1064-3745.  567, s 1- 25
  • Dahl, John Arne & Collas, Philippe (2009). MichoChIP: chromatin immunoprecipitation for small cell numbers. Methods in Molecular Biology.  ISSN 1064-3745.  567, s 59- 74
  • Dahl, John Arne; Reiner, Andrew Henry & Collas, Philippe (2009). Fast genomic muChIP-chip from 1000 cells. Genome Biology.  ISSN 1465-6906.  (10 R:13) . doi: 10.1186/gb-2009-10-2-r13
  • Noer, Agate; Lindeman, Leif Christopher & Collas, Philippe (2009). Histone H3 Modifications Associated With Differentiation and Long-Term Culture of Mesenchymal Adipose Stem Cells. Stem Cells and Development.  ISSN 1547-3287.  18(5), s 725- 736 . doi: 10.1089/scd.2008.0189
  • Pewsey, E; Bruce, C; Georgiou, AS; Jones, M; Baker, D.; Ow, SY; Wright, PC; Freberg, Christel Taranger; Collas, Philippe & Fazeli, A (2009). Proteomics Analysis of Epithelial Cells Reprogrammed in Cell-free Extract. Molecular & Cellular Proteomics.  ISSN 1535-9476.  8(6), s 1401- 1412 . doi: 10.1074/mcp.M800478-MCP200
  • Rogne, Marie; Stokka, Anne Jorunn; Tasken, Kjetil; Collas, Philippe & Kuntziger, Thomas Michel (2009). Mutually exclusive binding of PP1 and RNA to AKAP149 affects the mitochondrial network. Human Molecular Genetics.  ISSN 0964-6906.  18(5), s 978- 987 . doi: 10.1093/hmg/ddn425
  • Sørensen, Anita Løvstad & Collas, Philippe (2009). Immunoprecipitation of methylated DNA. Methods in Molecular Biology.  ISSN 1064-3745.  567, s 249- 262
  • Collas, Philippe & Dahl, John Arne (2008). Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation. Frontiers in Bioscience.  ISSN 1093-9946.  13, s 929- 943 . doi: 10.2741/2733
  • Collas, Philippe; Noer, Agate & Sørensen, Anita Løvstad (2008). Epigenetic basis for the differentiation potential of mesenchymal and embryonic stem cells. Transfusion Medicine and Hemotherapy.  ISSN 1660-3796.  35(3), s 205- 215 . doi: 10.1159/000127449
  • Dahl, John Arne & Collas, Philippe (2008). MicroChIP - a rapid micro chromatin immunoprecipitation assay for small cell samples and biopsies. Nucleic Acids Research.  ISSN 0305-1048.  36 . doi: 10.1093/nar/gkm1158
  • Dahl, John Arne; Duggal, Shivali; Coulston, N; Millar, D; Melki, J; Shahdafar, Aboulghassem; Brinchmann, Jan E. & Collas, Philippe (2008). Genetic and epigenetic instability of human bone marrow mesenchymal stem cells expanded in autologous serum or fetal bovine serum. International Journal of Developmental Biology.  ISSN 0214-6282.  52(8), s 1033- 1042 . doi: 10.1387/ijdb.082663jd
  • Håkelien, Anne-Mari; Delbarre, Erwan; Gaustad, Kristine Gjul; Buendia, B & Collas, Philippe (2008). Expression of the myodystrophic R453W mutation of lamin A in C2C12 myoblasts causes promoter-specific and global epigenetic defects. Experimental Cell Research.  ISSN 0014-4827.  314, s 1869- 1880 . doi: 10.1016/j.yexcr.2008.02.018
  • Lund-Olesen, T; Dufva, M; Dahl, John Arne; Collas, Philippe & Hansen, MF (2008). Sensitive on-chip quantitative real-time PCR performed on an adaptable and robust platform. Biomedical microdevices (Print).  ISSN 1387-2176.  10, s 769- 776 . doi: 10.1007/s10544-008-9189-0
  • Meza, Zepeda Leonardo; Noer, Agate; Dahl, John Arne; Micci, F; Myklebost, Ola & Collas, Philippe (2008). High-resolution analysis of genetic stability of human adipose tissue stem cells cultured to senescence. Journal of Cellular and Molecular Medicine (Print).  ISSN 1582-1838.  12(2), s 553- 563 . doi: 10.1111/j.1582-4934.2007.00146.x
  • Shahdafar, Aboulghassem; Løken, Sverre Bertrand; Dahl, John Arne; Tunheim, Siv Haugen; Collas, Philippe; Reinholt, Finn P.; Engebretsen, Lars & Brinchmann, Jan E. (2008). Persistence of Collagen Type II Synthesis and Secretion in Rapidly Proliferating Human Articular Chondrocytes In Vitro. Tissue engineering.  ISSN 1076-3279.  14(12), s 1999- 2007 . doi: 10.1089/ten.tea.2007.0344
  • Ugland, Hege Katrin; Boqest, Andrew Craig; Naderi, Soheil; Collas, Philippe & Blomhoff, Heidi Kiil (2008). cAMP-mediated induction of cyclin E sensitizes growth-arrested adipose stem cells to DNA damage-induced apoptosis. Molecular Biology of the Cell.  ISSN 1059-1524.  19(12), s 5082- 5092
  • Dahl, John Arne & Collas, Philippe (2008). A rapid micro chromatin immunoprecipitation assay (microChIP). Nature Protocols.  ISSN 1754-2189.  3, s 1032- 1045 . doi: 10.1038/nprot.2008.68
  • Boquest, Andrew Craig; Noer, Agate; Sørensen, Anita Løvstad; Vekterud, Kristin & Collas, Philippe (2007). CpG methylation profiles of endothelial cell-specific gene promoter regions in adipose tissue stem cells suggest limited differentiation potential toward the endothelial cell lineage. Stem Cells.  ISSN 1066-5099.  25(4), s 852- 861

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  • Collas, Philippe (ed.) (2009). Chromatin immunoprecipitation assays: Methods and protocols (Methods in Molecular Biology volum 567). Humana Press.  ISBN 978-1-60327-413-5.  266 s.

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  • Lopez Soop, Graciela; Reiner, Andrew Henry; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas Michel (2015). Regulation of Normal Mitotic Progression by A-kinase Anchoring Protein 95 (AKAP95).
  • Küntziger, Thomas Michel; Lund, Eivind Gard & Collas, Philippe (2013). Signal molecules anchoring at proliferation and differentiation genes by A-Kinase Anchoring Protein (AKAP) 95.
  • Collas, Philippe; Delbarre, Erwan; Küntziger, Thomas Michel; Lund, Eivind Gard; Ruppelt, Anja; Reiner, Andrew Henry & Sørensen, Anita Løvstad (2012). Epigenetic programming of stromal cell fate. International Journal of Molecular Medicine.  ISSN 1107-3756.  30, s S57- S57
  • Ivanauskiene, Kristina; Delbarre, Erwan; Küntziger, Thomas Michel & Collas, Philippe (2012). DAXX-dependent recruitment of histone variant H3.3 to PML bodies before deposition into chromatin. The FEBS Journal.  ISSN 1742-464X.  279, s 505- 505
  • Küntziger, Thomas Michel; Lund, Eivind Gard & Collas, Philippe (2012). Signal molecules anchoring at proliferation and differentiation genes by A-Kinase Anchoring Protein (AKAP) 95.
  • Rønningen, torunn; Collas, Philippe & Moskaug, Jan Øivind (2012). Obesity associated growth factors and elevated glucose regulates expression of inflammation regulatory genes in human adipose derived mesenchymal stem cells.
  • Andersen, Ingrid Stavenes & Collas, Philippe (2011). Promoter DNA methylation profiling by MeDIP-chip during the mid-blastula transition.
  • Winata, CL; Aanes, H; Lin, CH; Srinivasan, KG; Lee, S; Lim, A; Bourque, G; Collas, Philippe; Korzh, V; Gong, Z; Alestrom, P & Mathavan, S (2010). Transcriptomics during maternal-to-zygotic transition in the zebrafish: An mRNA-seq approach. Developmental Biology.  ISSN 0012-1606.  344(1), s 516- 517 . doi: 10.1016/j.ydbio.2010.05.380
  • Landsverk, Helga Bjarnason; Mora-Bermúdez, Felipe; Landsverk, Ole J. B.; Hasvold, Grete; Naderi, Soheil; Bakke, Oddmund; Ellenberg, Jan; Collas, Philippe; Syljuåsen, Randi & Kuntziger, Thomas Michel (2010). The protein phosphatase 1 regulator PNUTS is a novel component of the DNA damage response.
  • Winata, Cecilia L.; Aanes, Håvard; Lin, Chi Ho; Srinivasan, Kandhadayar G; Lee, Serene; Lim, Adrian; Bourque, Guillaume; Collas, Philippe; Korzh, Vladimir; Gong, Zhiyuan; Mathavan, Sinnakaruppan & Aleström, Peter (2010). Transcriptomics during maternal-to-zygotic transition in the zebrafish: An mRNA-seq approach. Developmental Biology.  ISSN 0012-1606.  (344), s 516- 517
  • Østrup, O; Hyttel, P; Klærke, D & Collas, Philippe (2010). TREATMENT OF 293T CELLS WITH XENOPUS EGG EXTRACT INDUCES NOT-STRESS-RELATED EPIGENETIC REMODELING OF RIBOSOMAL GENES. Reproduction, Fertility and Development.  ISSN 1031-3613.  22(1), s 346- 346
  • Delbarre, Erwan; Jacobsen, Bente Marie Berntsen; Kuntziger, Thomas Michel & Collas, Philippe (2009). Epigenetic environment of the histone variant H3.3 revealed by integration of imaging and genome-scale ChIP information.
  • Landsverk, Helga Bjarnason; Mora-Bermudez, Felipe; Landsverk, Ole J. B.; Hasvold, Grete; Naderi, Soheil; Bakke, Oddmund; Syljuåsen, Randi; Ellenberg, Jan; Collas, Philippe & Kuntziger, Thomas Michel (2009). PP1 nuclear targeting subunit (PNUTS/p99/R111/CAT53) is an integral part of the G2 DNA damage checkpoint.
  • Moskaug, Jan Øivind; Roberg, Bjørg Åse & Collas, Philippe (2008). Epigenetic regulation of osteogenic marker genes in mouse adipose SVF cells.

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Published Apr. 13, 2011 2:41 PM - Last modified Aug. 2, 2012 12:22 PM