Introduction to the Sum of Single Effects (SuSiE) model and its recent extensions

Biostatistical seminar with William Denault, Researcher, Oslo Centre for Biostatistics and Epidemiology, Oslo University Hospital.

Abstract

In this presentation, we present in detail the seminal work of Wang et al. “Sum of Single Effects” (SuSiE) model (JRSSB 2021) — introducing a simple new approach to variable selection in linear regression, with a particular focus on quantifying uncertainty in which variables should be selected. We also introduce a corresponding new fitting procedure — Iterative Bayesian Stepwise Selection (IBSS) — which is a Bayesian analogue of stepwise selection methods. IBSS shares the computational simplicity and speed of traditional stepwise methods, but instead of selecting a single variable at each step, IBSS computes a distribution on variables that captures uncertainty in which variable to select. We provide a formal justification of this intuitive algorithm by showing that it optimizes a variational approximation to the posterior distribution under the SuSiE model. Finally, we will discuss extension of the SuSiE model to summary statistics regression and functional phenotypes.

Published Mar. 9, 2023 10:44 AM - Last modified Sep. 14, 2023 9:39 AM