Irep Gözen

• Gözen, Irep & Dommersnes, Paul Gunnar (2020). Biological lipid nanotubes and their potential role in evolution. The European Physical Journal Special Topics.  ISSN 1951-6355.  229(17-18), s 2843- 2862 . doi: 10.1140/epjst/e2020-000130-7
• Gözen, Irep (2019). A Hypothesis for Protocell Division on the Early Earth. ACS Nano.  ISSN 1936-0851.  13(10), s 10869- 10871 . doi: 10.1021/acsnano.9b06584
• Gupta, Abhay; Gözen, Irep & Taylor, Michael (2019). A cellular automaton for modeling non-trivial biomembrane ruptures. Soft Matter.  ISSN 1744-683X.  15(20), s 4178- 4186 . doi: 10.1039/c8sm02032a Full text in Research Archive.
• Horowitz, Viva R; Chambers, Zachary C; Gözen, Irep; Dimiduk, Thomas G & Manoharan, Vinothan N (2019). Active colloidal particles in emulsion droplets: a model system for the cytoplasm. The European Physical Journal Special Topics.  ISSN 1951-6355.  227(17), s 2413- 2424 . doi: 10.1140/epjst/e2019-800026-y Show summary

  In living cells, molecular motors create activity that enhances the diffusion of particles throughout the cytoplasm, and not just ones attached to the motors. We demonstrate initial steps toward creating artificial cells that mimic this phenomenon. Our system consists of active, Pt-coated Janus particles and passive tracers confined to emulsion droplets. We track the motion of both the active particles and passive tracers in a hydrogen peroxide solution, which serves as the fuel to drive the motion. We first show that correcting for bulk translational and rotational motion of the droplets induced by bubble formation is necessary to accurately track the particles. After drift correction, we find that the active particles show enhanced diffusion in the interior of the droplets and are not captured by the droplet interface. At the particle and hydrogen peroxide concentrations we use, we observe little coupling between the active and passive particles. We discuss the possible reasons for lack of coupling and describe ways to improve the system to more effectively mimic cytoplasmic activity.

• Joemetsa, Silver; Spustová, Karolina; Kustanovich, Kiryl; Ainla, Alar; Schindler, Severin; Eigler, Siegfried; Lobovkina, Tatsiana; Lara-Avila, Samuel; Jesorka, Aldo & Gözen, Irep (2019). Molecular Lipid Films on Microengineering Materials. Langmuir.  ISSN 0743-7463.  35(32), s 10286- 10298 . doi: 10.1021/acs.langmuir.9b01120
• Köksal, Elif; Belletati, Patrícia Fernandes; Reint, Ganna; Olsson, Ragni; Leitl, Kira; Kantarci, Ilayda & Gözen, Irep (2019). Spontaneous Formation and Rearrangement of Artificial Lipid Nanotube Networks as a Bottom-Up Model for Endoplasmic Reticulum. Journal of Visualized Experiments.  ISSN 1940-087X.  2019(143), s 1- 9 . doi: 10.3791/58923 Full text in Research Archive.
• Köksal, Elif; Liese, Susanne; Kantarci, Ilayda; Olsson, Ragni; Carlson, Andreas & Gözen, Irep (2019). Nanotube-Mediated Path to Protocell Formation. ACS Nano.  ISSN 1936-0851.  13(6), s 6867- 6878 . doi: 10.1021/acsnano.9b01646 Full text in Research Archive.
• Kustanovich, Kiryl; Yantchev, Ventsislav; Doosti, Baharan Ali; Gözen, Irep & Jesorka, Aldo (2019). A microfluidics-integrated impedance/surface acoustic resonance tandem sensor. Sensing and Bio-Sensing Research.  25 . doi: 10.1016/j.sbsr.2019.100291
• Rydmark, Marcella Orwick; Christensen, Mikkel; Köksal, Elif; Kantarci, Ilayda; Kustanovich, Kiryl; Yantchev, Ventsislav; Jesorka, Aldo & Gözen, Irep (2019). Styrene maleic acid copolymer induces pores in biomembranes. Soft Matter.  ISSN 1744-683X.  15(39), s 7934- 7944 . doi: 10.1039/C9SM01407A Full text in Research Archive.
• Bilal, Taylan & Gözen, Irep (2017). Formation and dynamics of endoplasmic reticulum-like lipid nanotube networks. Biomaterials Science.  ISSN 2047-4830.  5(7), s 1256- 1264 . doi: 10.1039/c7bm00227k
• Taylor, Michael; Gözen, Irep; Patel, Samir; Jesorka, Aldo & Bertoldi, Katia (2016). Peridynamic Modeling of Ruptures in Biomembranes. PLOS ONE.  ISSN 1932-6203. . doi: 10.1371/journal.pone.0165947
• Gözen, Irep & Jesorka, Aldo (2015). Lipid nanotube networks: Biomimetic Cell-to-Cell Communication and Soft-Matter Technology. Nanofabrication.  ISSN 2299-680X.  2, s 27- 31 . doi: 10.1515/nanofab-2015-0003
• Luo, ZhengYuan; Güven, Sinan; Gözen, Irep; Chen, Pu; Tasoglu, Savas; Anchan, Raymond M; Bai, BoFeng & Demirci, Utkan (2015). Deformation of a single mouse oocyte in a constricted microfluidic channel. Microfluidics and Nanofluidics.  ISSN 1613-4982.  19, s 883- 890 . doi: 10.1007/s10404-015-1614-0
• El Assal, Rami; Güven, Sinan; Gürkan, Umut Atakan; Gözen, Irep; Shafiee, Hadi; Dalbeyler, Sedef; Abdalla, Noor; Thomas, Gawain; Fuld, Wendy; Illigens, Ben M. W.; Estanislau, Jessica; Khoory, Joseph; Kaufman, Richard; Zylberberg, Claudia; Lindeman, Neal; Wen, Qi; Ghiran, Ionita & Demirci, Utkan (2014). Bio-Inspired Cryo-Ink Preserves Red Blood Cell Phenotype and Function During Nanoliter Vitrification. Advanced Materials.  ISSN 0935-9648.  26, s 5815- 5822 . doi: 10.1002/adma.201400941
• Gözen, Irep & Dommersnes, Paul Gunnar (2014). Pore dynamics in lipid membranes. The European Physical Journal Special Topics.  ISSN 1951-6355.  223, s 1813- 1829 . doi: 10.1140/epjst/e2014-02228-5
• Ainla, Alar; Gözen, Irep; Hakonen, Bodil & Jesorka, Aldo (2013). Lab on a Biomembrane: Rapid prototyping and manipulation of 2D fluidic lipid bilayer circuits. Scientific Reports.  ISSN 2045-2322.  3 . doi: 10.1038/srep02743
• Gözen, Irep; Örtmen, Bahanur; Põldsalu, Inga; Dommersnes, Paul Gunnar; Orwar, Owe & Jesorka, Aldo (2013). Repair of large area pores in supported double bilayers. Soft Matter.  ISSN 1744-683X.  9, s 2787- 2792 . doi: 10.1039/C3SM27429B
• Gözen, Irep; Shaali, Mehrnaz; Ainla, Alar; Örtmen, Bahanur; Põldsalu, Inga; Kustanovich, Kiryl; Jeffries, Gavin D. M.; Konkoli, Zoran; Dommersnes, Paul Gunnar & Jesorka, Aldo (2013). Thermal migration of molecular lipid films as a contactless fabrication strategy for lipid nanotube networks. Lab on a Chip.  ISSN 1473-0197.  13, s 3822- 3826 . doi: 10.1039/C3LC50391G
• Gözen, Irep; Dommersnes, Paul Gunnar; Orwar, Owe & Jesorka, Aldo (2012). Evidence for membrane flow through pores in stacked phospholipid membranes. Soft Matter.  ISSN 1744-683X.  8, s 6220- 6225 . doi: 10.1039/C2SM25629K
• Gözen, Irep & Jesorka, Aldo (2012). Instrumental Methods to Characterize Molecular Phospholipid Films on Solid Supports. Analytical Chemistry.  ISSN 0003-2700.  84 (2), s 822- 838 . doi: 10.1021/ac203126f
• Gözen, Irep; Billerit, Celine; Dommersnes, Paul Gunnar; Jesorka, Aldo & Orwar, Owe (2011). Calcium-ion-controlled nanoparticle-induced tubulation in supported flat phospholipid vesicles. Soft Matter.  ISSN 1744-683X.  7, s 9706- 9713 . doi: 10.1039/C1SM05677H
• Gözen, Irep; Dommersnes, Paul Gunnar; Czolkos, Ilja; Jesorka, Aldo; Lobovkina, Tatsiana & Orwar, Owe (2010). Fractal avalanche ruptures in biological membranes. Nature Materials.  ISSN 1476-1122.  9, s 908- 912 . doi: 10.1038/nmat2854
• Gözen, Irep & Örmeci, Banu (2010). Effect of daylight on regrowth of bacteria in anaerobically digested sludge. Water Science and Technology.  ISSN 0273-1223.  62 (2), s 364- 369 . doi: 10.2166/wst.2010.268
• Lobovkina, Tatsiana; Gözen, Irep; Erkan, Yavuz; Olofsson, Jessica; Weber, Stephen G. & Orwar, Owe (2010). Protrusive growth and periodic contractile motion in surface-adhered vesicles induced by Ca2+-gradients. Soft Matter.  ISSN 1744-683X.  6, s 268- 272 . doi: 10.1039/B916805M
• Ainla, Alar; Gözen, Irep; Orwar, Owe & Jesorka, Aldo (2009). A Microfluidic Diluter Based on Pulse Width Flow Modulation. Analytical Chemistry.  ISSN 0003-2700.  81 (13), s 5549- 5556 . doi: 10.1021/ac9010028

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• Gözen, Irep; Dommersnes, Paul Gunnar & Jesorka, Aldo (2015). Lipid Self-Spreading on Solid Substrates. IntechOpen.  ISBN 978-953-51-2216-6.  36 s.
• Gözen, Irep (2013). The self–spreading double bilayer/Advances in Lipid Membrane Nanotechnology. Chalmers University of Technology.  ISBN 978-91-7385-813-7.  110 s.

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• Balaban, Theodor Silviu; Gözen, Irep & Jesorka, Aldo (2016). The Nobel Prize for Chemistry 2016 highlights tiny synthetic machines. NBS-nytt.  ISSN 0801-3535.  (4), s 11- 11

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