Ingvild Elise Bjerke

Postdoctoral Fellow - Neural Systems
Image of Ingvild Elise Bjerke
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Visiting address Sognsvannsveien 9 Domus Medica 0372 Oslo
Postal address Postboks 1105 Blindern 0317 Oslo

Academic interests

I combine my studies of the normal mouse brain development with neuroinformatics and digital atlasing. I am passionate about the open science movement and FAIR research, and make all data from my research public.

Expertise:

  • Immunohistochemistry
  • Image segmentation
  • Cell counting
  • Neuroinformatics
  • Brain atlases
  • Brain anatomy

Courses taught

  • IMB9345 – Neuroscience data integration through use of digital brain atlases

Background

  • PhD Neuroscience, University of Oslo, Norway
  • MSc Neuroscience, Norwegian University of Science and Technology, Norway

Awards

 

Publications

  • Bjerke, Ingvild Elise; Cullity, E. R.; Kjelsberg, Kasper; Charan, K M; Leergaard, Trygve B. & Kim, J. H. (2022). DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains. Scientific Data. ISSN 2052-4463. 9, p. 1–11. doi: 10.1038/s41597-022-01268-8.
  • Bjerke, Ingvild Elise; Yates, Sharon Christine; Laja, Arthur; Witter, Menno; Puchades, Maja & Bjaalie, Jan G. [Show all 7 contributors for this article] (2020). Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain. iScience. ISSN 2589-0042. 24:101906(1), p. 1–52. doi: 10.1016/j.isci.2020.101906. Full text in Research Archive
  • Bjerke, Ingvild Elise; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2020). Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data. ISSN 2052-4463. 7. doi: 10.6084/m9.figshare.12199088.
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi & Yates, Sharon Christine [Show all 9 contributors for this article] (2018). Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy. ISSN 1662-5129. 12. doi: 10.3389/fnana.2018.00082. Full text in Research Archive
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L & Fiorilli, J [Show all 11 contributors for this article] (2018). Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry. ISSN 0924-9338. 50, p. 70–76. doi: 10.1016/j.eurpsy.2018.02.004. Full text in Research Archive
  • Berggaard, Nina; Bjerke, Ingvild Elise; Paulsen, Anna Elisabeth Bråthen; Hoang, Linh; Skogaker, Nan Elisabeth Tostrup & Witter, Menno [Show all 7 contributors for this article] (2018). Development of Parvalbumin-Expressing Basket Terminals in Layer II of the Rat Medial Entorhinal Cortex. eNeuro. ISSN 2373-2822. 5(3), p. 1–12. doi: 10.1523/ENEURO.0438-17.2018. Full text in Research Archive

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  • Leergaard, Trygve B.; Bjerke, Ingvild Elise; Bjaalie, Jan G.; Palomero-Gallagher, Nicola; Puchades, Maja & Carey, Harry [Show all 7 contributors for this article] (2022). Neuroscience data integration through use of digital brain atlases .
  • Bjerke, Ingvild Elise; Imad, Jala; Clascá, Francisco; Groenewegen, Henk J.; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2022). Waxholm Space atlas of the Sprague Dawley rat brain version 4: A volumetric atlas enabling data integration and analysis.
  • Bjerke, Ingvild Elise (2022). Mouse and rat brain atlases: Registering and analysing rodent brain data .
  • Bjerke, Ingvild Elise; Leergaard, Trygve B.; Bjaalie, Jan G. & Kim, Jee Hyun (2022). Quantitative map of dopamine 1- and 2-receptor positive cells in the developing mouse forebrain.
  • Leergaard, Trygve B.; Puchades, Maja ; Kleven, Heidi & Bjerke, Ingvild Elise (2022). HBP Brain Matters webinar #12 "Rodent Brain Atlasing".
  • Bjerke, Ingvild Elise; Cullity, Ellen Rose; Kjelsberg, Kasper; Charan, Kristel; Leergaard, Trygve B. & Kim, Jee Hyun (2022). Map of dopamine 1- and 2-receptor positive cells in the developing mouse forebrain.
  • Leergaard, Trygve B.; Bjerke, Ingvild Elise; Palomero-Gallagher, Nicola; Witter, Menno; Dickscheid, Timo & Puchades, Maja [Show all 7 contributors for this article] (2021). Neuroscience data integration through use of digital brain atlases.
  • Puchades, Maja ; Yates, Sharon Christine; Bjerke, Ingvild Elise; Groeneboom, Nicolaas; Csucs, Gergely & Leergaard, Trygve B. [Show all 7 contributors for this article] (2021). Implementing the QUINT workflow for spatial quantitative analysis of labelling in mice and rats.
  • Reiten, Ingrid; Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Aasebø, Ida Elisabeth Jørgensen & Yates, Sharon Christine [Show all 12 contributors for this article] (2020). Data sharing through the online EBRAINS platform: a new service for brain research.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan & Hilverling, Anna [Show all 19 contributors for this article] (2019). Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise & Schmid, Oliver [Show all 17 contributors for this article] (2019). Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable.
  • Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin & Bjerke, Ingvild Elise [Show all 11 contributors for this article] (2019). Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases.
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Bjaalie, Jan G. & Leergaard, Trygve B. (2018). Best practices for determining and documenting neuroanatomical locations in the rodent brain.
  • Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Mapping topographical organization in mouse brain subcortical axonal projections using Human Brain Project infrastructure.
  • Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi & Puchades, Maja [Show all 8 contributors for this article] (2018). Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure.
  • Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj & Øvsthus, Martin [Show all 12 contributors for this article] (2017). Interactive tools for registering of 2D and 3D images to reference atlases.
  • Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen & Kleven, Heidi [Show all 18 contributors for this article] (2017). Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices.
  • Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2017). Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data .
  • Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja ; Telefont, Martin & Jeff, Muller [Show all 9 contributors for this article] (2017). Data integration through digital brain atlasing: Human Brain Project infrastructure.
  • Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2017). Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations.
  • Puchades, Maja ; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise & Andersson, Krister [Show all 8 contributors for this article] (2017). Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space.
  • Puchades, Maja ; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely & Leergaard, Trygve Brauns [Show all 7 contributors for this article] (2017). Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases.
  • Puchades, Maja ; Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister; Csúcs, Gergely & Leergaard, Trygve Brauns [Show all 7 contributors for this article] (2016). Spatial registration of serial histological image data to reference brain atlases.
  • Berggaard, Nina; Bjerke, Ingvild Elise; Paulsen, Anna Elisabeth Bråthen & Van der Want, Johannes (2016). Parvalbumin interneurons within a spatially modulating network: development and connectivity.

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Published June 2, 2022 8:48 AM - Last modified June 2, 2022 8:48 AM