Jukka Corander

Image of Jukka Corander
Norwegian version of this page
Mobile phone +47 48049047
Username
Visiting address Sognsvannsveien 9 Domus Medica 0372 OSLO
Postal address Postboks 1122 Blindern 0317 OSLO

Academic interests

I'm interested in and doing actively research in the following areas: Bayesian statistics, inference, stochastic simulation algorithms, probabilistic graphical models, machine learning, evolution, population genetics, forensic statistics.

Current positions and affiliations

2016 -   Professor, Department of Biostatistics, University of Oslo, Norway

2009 -   Professor, Department of Mathematics and Statistics, University of Helsinki, Finland

2016 -   May-August 2016, Visiting fellow, Churchill College, University of Cambridge, UK

Previous positions 

2007 – 2016     Professor, Department of Mathematics, Åbo Akademi University, Finland

2003 – 2007     Senior lecturer, Department of Mathematics and Statistics, University of Helsinki, Finland

Institutional responsibilities

2010 –             Vice-director, Department of Mathematics and Statistics, University of Helsinki, Finland

2014 – 2017     Board member of Faculty of Sciences, University of Helsinki

2015 – 2017     Vice-director, COIN Centre of Excellence

2015 –             Research Program director, Helsinki Institute of Information Technology (HIIT)

Memeberships of scientific societies

2009 –             Member, International Biometric Society

2013 – 2016     President, The Finnish Society of Biostatistics

Awards and selected grants

2008                 Per Brahe Award “Young scientist of the year” Åbo Akademi University, Finland

2015                Cozzarelli prize by the Proceedings of the National Academy of Sciences for an outstanding scientific excellence and originality in a publication during 2014.

2009-14            ERC StG, SmartBayes, from PE1

2012-17            Centre of Excellence in Computational Inference Research (COIN)

 

 

Publications

  • Abudahab, Khalil; Prada, Joaquín; Yang, Zhirong; Bentley, Stephen; Croucher, Nicholas; Corander, Jukka & Anensen, David (2019). PANINI: Pangenome Neighbour Identification for Bacterial Populations. Microbial Genomics.  ISSN 2057-5858.  5(4) . doi: 10.1099/mgen.0.000220
  • Lu, Yao; Corander, Jukka & Yang, Zhirong (2019). Doubly Stochastic Neighbor Embedding on Spheres. Pattern Recognition Letters.  ISSN 0167-8655.  128, s 100- 106 . doi: https://doi.org/10.1016/j.patrec.2019.08.026
  • Chiner-Oms, Álvaro; Sanchez-Buso, Leonor; Corander, Jukka; Gagneux, Sébastien; Harris, Simon R; Young, D; Gonzalez-Candelas, Fernando & Comas, Inaki (2019). Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex. Indian Journal of Pure & Applied Physics.  ISSN 0019-5596.  5(6), s 1- 14 . doi: 10.1126/sciadv.aaw3307
  • Colclough, Abigail; Corander, Jukka; Sheppard, Samuel K.; Bayliss, S. C. & Vos, Michiel (2019). Patterns of cross-resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials. Evolutionary Applications.  ISSN 1752-4571.  12(5), s 878- 887 . doi: 10.1111/eva.12762
  • Corander, Jukka; Hyttinen, Antti; Kontinen, Juha; Pensar, Johan & Väänänen, Jouko (2019). A logical approach to context-specific independence. Annals of Pure and Applied Logic.  ISSN 0168-0072.  170(9), s 975- 992 . doi: 10.1016/j.apal.2019.04.004
  • Cremers, Amelieke J. H.; Mobegi, Fredrick M.; Van Der Gaast-De Jongh, Christa; Van Weert, Michelle; Van Opzeeland, Fred J.; Vehkala, Minna; Knol, Mirjam J.; Bootsma, Hester J.; Välimäki, Niko; Croucher, Nicholas J.; Meis, Jacques F.; Bentley, Stephen; van Hijum, Sacha A.F.T.; Corander, Jukka; Zomer, Aldert L.; Ferwerda, Gerben & De Jonge, Marien I. (2019). The contribution of genetic variation of streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease. Clinical Infectious Diseases.  ISSN 1058-4838.  68(1), s 61- 69 . doi: 10.1093/cid/ciy417
  • Gladstone, Rebecca A; Lo, Stephanie W; Lees, John A; Croucher, Nicholas J.; van Tonder, Andries J.; Corander, Jukka; Page, Andrew J; Marttinen, Pekka; Bentley, Leon J.; Ochoa, Theresa J.; Ho, Pak Leung; du Plessis, Mignon; Cornick, Jennifer E.; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A.; Madhi, Shabir A.; Hawkins, Paulina A.; Everett, Dean B.; Antonio, Martin; Dagan, Ron; Klugman, Keith; von Gottberg, Anne; McGee, Lesley; Breiman, Robert F. & Bentley, Stephen D. (2019). International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBioMedicine.  ISSN 2352-3964.  43, s 338- 346 . doi: 10.1016/j.ebiom.2019.04.021
  • Gouliouris, Theodore; Raven, Kathy E; Moradigaravand, Danesh; Ludden, Catherine; Coll, Francesc; Blane, Beth; Naydenova, Plamena; Horner, Carolyne; Brown, Nicholas M; Corander, Jukka; Limmathurotsakul, Direk; Parkhill, Julian & Peacock, Sharon J. (2019). Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment. Genome Research.  ISSN 1088-9051.  29(4), s 626- 634 . doi: 10.1101/gr.232629.117
  • Kachroo, Priyanka; Eraso, Jesus M.; Beres, Stephen B.; Olsen, Randall J.; Zhu, Luchang; Nasser, Waleed; Bernard, Paul E.; Cantu, Conception C.; Saavedra, Matthew Ojeda; Arredondo, María José; Strope, Benjamin; Do, Hackwon; Kumaraswami, Muthiah; Vuopio, Jaana; Gröndahl-Yli-Hannuksela, Kirsi; Kristinsson, Karl G.; Gottfredsson, Magnus; Pesonen, Maiju; Pensar, Johan; Davenport, Emily R.; Clark, Andrew G.; Corander, Jukka; Caugant, Dominique A; Gaini, Shahin; Magnussen, Marita Debess; Kubiak, Samantha L.; Nguyen, Hoang A. T.; Long, S. Wesley; Porter, Adeline R.; DeLeo, Frank R. & Musser, James M. (2019). Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis. Nature Genetics.  ISSN 1061-4036.  51(3), s 548- 559 . doi: 10.1038/s41588-018-0343-1
  • Lees, John A; Harris, Simon R; Tonkin-Hill, Gerry; Gladstone, Rebecca A; Lo, Stephanie W; Weiser, Jeffrey N; Corander, Jukka; Bentley, Stephen D & Croucher, Nicholas J (2019). Fast and flexible bacterial genomic epidemiology with PopPUNK.. Genome Research.  ISSN 1088-9051.  29(2), s 304- 316 . doi: 10.1101/gr.241455.118
  • McNally, Alan; Kallonen, Teemu; Connor, Christopher; Abudahab, Khalil; Aanensen, David M.; Horner, Carolyne S; Peacock, Sharon J.; Parkhill, Julian; Croucher, Nicholas J. & Corander, Jukka (2019). Diversification of colonization factors in a multidrug-resistant escherichia coli lineage evolving under negative frequency- dependent selection. mBio.  ISSN 2161-2129.  10(2) . doi: 10.1128/mBio.00644-19
  • Sanchez-Buso, Leonor; Golparian, Daniel; Corander, Jukka; Grad, Yonatan H.; Ohnishi, Makoto; Flemming, Rebecca; Parkhill, Julian; Bentley, Stephen D; Unemo, Magnus & Harris, Simon R (2019). The impact of antimicrobials on gonococcal evolution. Nature Microbiology.  ISSN 2058-5276. . doi: 10.1038/s41564-019-0501-y
  • Tadei, Alessandro; Pensar, Johan; Corander, Jukka; Finnilä, Katarina; Santtila, Pekka & Antfolk, Jan (2019). A Bayesian Decision-Support Tool for Child Sexual Abuse Assessment and Investigation. Sexual abuse. A Journal of Research and Treatment.  ISSN 1079-0632.  31(4), s 374- 396 . doi: 10.1177/1079063217732791
  • Todorovic, Milica; Gutmann, Michael U.; Corander, Jukka & Rinke, Patrick (2019). Bayesian inference of atomistic structure in functional materials. npj Computational Materials.  ISSN 2057-3960.  5(1) . doi: 10.1038/s41524-019-0175-2
  • Wailan, Alexander M.; Coll, Francesc; Heinz, Eva; Tonkin-Hill, Gerry; Corander, Jukka; Feasey, Nicholas A. & Thomson, Nicholas R. (2019). rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree. Microbial Genomics.  ISSN 2057-5858.  5(4) . doi: 10.1099/mgen.0.000264
  • Arnold, Brian; Gutmann, Michael U.; Grad, Yonatan H.; Sheppard, Samuel K.; Corander, Jukka; Lipsitch, Marc & Hanage, William P. (2018). Weak epistasis may drive adaptation in recombining bacteria. Genetics.  ISSN 0016-6731.  208(3), s 1247- 1260 . doi: 10.1534/genetics.117.300662
  • Arredondo-Alonso, Sergio; Rogers, Malbert R.C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta; Corander, Jukka; Willems, Rob J.L. & Schürch, Anita C. (2018). mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species. Microbial Genomics.  ISSN 2057-5858.  4(11), s 1- 15 . doi: 10.1099/mgen.0.000224
  • Flahou, Bram; Rossi, Mirko; Bakker, Jaco; Langermans, Jan AM; Heuvelman, Edwin; Solnick, Jay V; Martin, Miriam E; O'Rourke, Jani; Ngoan, Le Duc; Hoa, Nguyen Xuan; Nakamura, Masahiko; Øverby, Anders; Matsui, Hidenori; Ota, Hiroyoshi; Matsumoto, Takehisa; Foss, Dennis L; Kopta, Laurice A; Omotosho, Oladipo; Franciosini, Maria Pia; Casagrande Proietti, Patrizia; Guo, Aizhen; Liu, Han; Borilova, Gabriela; Bracarense, Ana Paula; Linden, Sara K; De Bruyckere, Sofie; Zhang, Guangzhi; De Witte, Chloe; Smet, Annemieke; Pasmans, Frank; Ducatelle, Richard; Corander, Jukka & Haesebrouck, Freddy (2018). Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs. The ISME Journal.  ISSN 1751-7362.  12(1), s 77- 86 . doi: 10.1038/ismej.2017.145
  • Gouliouris, Theodore; Raven, Kathy E; Ludden, Catherine; Blane, Beth; Corander, Jukka; Horner, Carolyne S; Hernandez-Garcia, Juan; Wood, Paul; Hadjirin, Nazreen F; Radakovic, Milorad; Holmes, Mark; de Goffau, Marcus; Brown, Nicholas M; Parkhill, Julian & Peacock, Sharon J. (2018). Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom. mBio.  ISSN 2161-2129.  9(6) . doi: 10.1128/mBio.01780-18
  • Lees, John A; Galardini, Marco; Bentley, Stephen D; Weiser, Jeffrey N & Corander, Jukka (2018). pyseer: a comprehensive tool for microbial pangenome-wide association studies. Bioinformatics.  ISSN 1367-4803.  34(24), s 4310- 4312 . doi: 10.1093/bioinformatics/bty539
  • Lin, Xiaoxi B.; Wang, Tuo; Stothard, Paul; Corander, Jukka; Wang, Jun; Baines, John F.; Knowles, Sarah C.L.; Baltrūnaitė, Laima; Tasseva, Guergana; Schmaltz, Robert; Tollenaar, Stephanie; Cody, Liz A.; Grenier, Theodore; Wu, Wei; Ramer-Tait, Amanda E. & Walter, Jens (2018). The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract. The ISME Journal.  ISSN 1751-7362.  12(11), s 2770- 2784 . doi: 10.1038/s41396-018-0211-0
  • Lintusaari, Jarno; Vuollekoski, Henri; Kangasraasio, Antti; Skyten, Kusti; Jarvenpaa, Marko; Marttinen, Pekka; Gutmann, Michael U.; Vehtari, Aki; Corander, Jukka & Kaski, Samuel (2018). ELFI: Engine for Likelihood-Free Inference. Journal of machine learning research.  ISSN 1532-4435.  19(16), s 1- 7
  • Meric, Guillaume; Mageiros, Leonardos; Pensar, Johan; Laabei, Maisem; Yahara, Koji; Pascoe, Ben; Kittiwan, Nattinee; Tadee, Phacharaporn; Post, Virginia; Lamble, Sarah; Bowden, Rory; Bray, James E.; Morgenstern, Mario; Jolley, Keith A.; Maiden, Martin CJ; Feil, Edward J.; Didelot, Xavier; Miragaia, Maria; de Lencastre, Herminia; Moriarty, T Fintan; Rohde, Holger; Massey, Ruth; Mack, Dietrich; Corander, Jukka & Sheppard, Samuel K (2018). Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. Nature Communications.  ISSN 2041-1723.  9(1) . doi: 10.1038/s41467-018-07368-7
  • Meric, Guillaume; McNally, Alan; Pessia, Alberto; Mourkas, Evangelos; Pascoe, Ben; Mageiros, Leonardos; Vehkala, Minna; Corander, Jukka & Sheppard, Samuel K (2018). Convergent amino acid signatures in polyphyletic campylobacter jejuni subpopulations suggest human niche tropism. Genome Biology and Evolution.  ISSN 1759-6653.  10(3), s 763- 774 . doi: 10.1093/gbe/evy026
  • Pensar, Johan; Kohonen, J & Corander, Jukka (2018). Exact Bayesian learning of Partition Directed Acyclic Graphs. Journal of Physics: Conference Series.  ISSN 1742-6588.  1036(1), s 1- 12 . doi: 10.1088/1742-6596/1036/1/012017
  • Pessia, Alberto & Corander, Jukka (2018). Kpax3: Bayesian bi-clustering of large sequence datasets. Bioinformatics.  ISSN 1367-4803.  34(12), s 2132- 2133 . doi: 10.1093/bioinformatics/bty056
  • Richardson, Emily J; Bacigalupe, Rodrigo; Harrison, Ewan M; Weinert, Lucy A.; Lycett, Samantha; Vrieling, Manouk; Robb, Kirsty; Hoskisson, Paul A; Holden, Matthew T.G.; Feil, Edward J.; Paterson, Gavin K; Tong, Steven Y C; Shittu, Adebayo; van Wamel, Willem; Aanensen, David M.; Parkhill, Julian; Peacock, Sharon J.; Corander, Jukka; Holmes, Mark & Fitzgerald, J. Ross (2018). Gene exchange drives the ecological success of a multi-host bacterial pathogen. Nature Ecology and Evolution.  ISSN 2397-334X.  2(9), s 1468- 1478 . doi: 10.1038/s41559-018-0617-0
  • Sipola, Aleksi; Marttinen, Pekka & Corander, Jukka (2018). Bacmeta: simulator for genomic evolution in bacterial metapopulations. Bioinformatics.  ISSN 1367-4803.  34(13), s 2308- 2310 . doi: 10.1093/bioinformatics/bty093
  • Smet, Annemieke; Yahara, Koji; Rossi, Mirko; Tay, Alfred; Backert, Steffen; Armin, Ensser; Fox, James G.; Flahou, Bram; Ducatelle, R.; Haesebrouck, Freddy & Corander, Jukka (2018). Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence. The ISME Journal.  ISSN 1751-7362.  s 1- 14 . doi: 10.1038/s41396-018-0199-5
  • Top, Janetta; Sinnige, Jan C.; Brouwer, Ellen C.; Werner, Guido; Corander, Jukka; Severin, Juliëtte A.; Jansen, Rogier; Bathoorn, Erik; Bonten, Marc J.M.; Rossen, John W.A. & Willems, Rob J.L. (2018). Identification of a novel genomic island associated with vand-type vancomycin resistance in six Dutch vancomycin-resistant enterococcus faecium isolates. Antimicrobial Agents and Chemotherapy.  ISSN 0066-4804.  62:e01793(3), s 1- 7 . doi: 10.1128/AAC.01793-17
  • Van den Bunt, G.; Top, J.; Hordijk, J.; De Greeff, S.C.; Mughini-Gras, L.; Corander, Jukka; van Pelt, W.; Bonten, M.J.M.; Fluit, A.C. & Willems, Rob J.L. (2018). Intestinal carriage of ampicillin- and vancomycin-resistant Enterococcus faecium in humans, dogs and cats in the Netherlands. Journal of Antimicrobial Chemotherapy.  ISSN 0305-7453.  73(3), s 607- 614 . doi: 10.1093/jac/dkx455
  • Xu, Yingying; Puranen, Santeri; Corander, Jukka & Kabashima, Yoshiyuki (2018). Inverse finite-size scaling for high-dimensional significance analysis. Physical review. E.  ISSN 2470-0045.  97(6) . doi: 10.1103/PhysRevE.97.062112
  • Chewapreecha, Claire; Holden, Matthew T.G.; Vehkala, Minna; Välimäki, Niko; Yang, Zhirong; Harris, Simon R.; Mather, Alison E.; Tuanyok, Apichai; De Smet, Birgit; Le Hello, Simon; Bizet, Chantal; Mayo, Mark; Wuthiekanun, Vanaporn; Limmathurotsakul, Direk; Phetsouvanh, Rattanaphone; Spratt, Brian G.; Corander, Jukka; Keim, Paul; Dougan, Gordon; Dance, David A.B.; Currie, Bart J.; Parkhill, Julian & Peacock, Sharon J. (2017). Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature Microbiology.  ISSN 2058-5276.  2:16263, s 1- 8 . doi: 10.1038/nmicrobiol.2016.263
  • Corander, Jukka; Fraser, Christophe; Gutmann, Michael U.; Arnold, Brian; Hanage, William P; Bentley, Stephen D; Lipsitch, Marc & Croucher, Nicholas J (2017). Frequency-dependent selection in vaccine-associated pneumococcal population dynamics. Nature Ecology and Evolution.  ISSN 2397-334X.  1(12), s 1950- 1960 . doi: 10.1038/s41559-017-0337-x
  • Duplouy, Anne; Wong, Swee C; Corander, Jukka; Lehtonen, Rainer & Hanski, Ilkka (2017). Genetic effects on life-history traits in the Glanville fritillary butterfly. PeerJ.  ISSN 2167-8359.  2017(5) . doi: 10.7717/peerj.3371
  • Gutmann, Michael; Dutta, Ritabrata; Kaski, Samuel & Corander, Jukka (2017). Likelihood-free inference via classification. Statistics and computing.  ISSN 0960-3174.  28(2), s 411- 425 . doi: 10.1007/s11222-017-9738-6
  • Kallonen, Teemu Ville Sakari; Brodrick, Hayley J; Harris, Simon R.; Corander, Jukka; Brown, Nicholas M; Martin, Veronique; Peacock, Sharon J. & Parkhill, Julian (2017). Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. Genome Research.  ISSN 1088-9051.  27(8), s 1437- 1449 . doi: 10.1101/gr.216606.116
  • Leppä-aho, Janne; Pensar, Johan; Roos, Teemu & Corander, Jukka (2017). Learning Gaussian graphical models with fractional marginal pseudo-likelihood. International Journal of Approximate Reasoning.  ISSN 0888-613X.  83, s 21- 42 . doi: 10.1016/j.ijar.2017.01.001
  • Lintusaari, Jarno; Gutmann, Michael U.; Dutta, Ritabrata; Kaski, Samuel & Corander, Jukka (2017). Fundamentals and recent developments in approximate Bayesian computation. Systematic Biology.  ISSN 1063-5157.  66(1), s e66- e82 . doi: 10.1093/sysbio/syw077
  • Mohandesan, Elmira; Fitak, Robert R; Corander, Jukka; Yadamsuren, Adiya; Chuluunbat, Battsetseg; Abdelhadi, Omer; Raziq, Abdul; Nagy, Peter; Stalder, Gabrielle; Walzer, Chris; Faye, Bernard & Burger, Pamela A (2017). Mitogenome Sequencing in the Genus Camelus Reveals Evidence for Purifying Selection and Long-term Divergence between Wild and Domestic Bactrian Camels. Scientific Reports.  ISSN 2045-2322.  7(1) . doi: 10.1038/s41598-017-08995-8
  • Mostowy, Rafal; Croucher, Nicholas J.; Andam, Cheryl P; Corander, Jukka; Hanage, William P & Marttinen, Pekka (2017). Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations. Molecular biology and evolution.  ISSN 0737-4038.  34(5), s 1167- 1182 . doi: 10.1093/molbev/msx066
  • Murray, Susan; Pascoe, Ben; Meric, Guillaume; Mageiros, Leonardos; Yahara, Koji; Hitchings, Matthew D; Friedmann, Yasmin; Wilkinson, Thomas S; Gormley, Fraser J; Mack, Dietrich; Bray, James E.; Lamble, Sarah; Bowden, Rory; Jolley, Keith A.; Maiden, Martin C.J.; Wendlandt, Sarah; Schwarz, Stefan; Corander, Jukka; Fitzgerald, J. Ross & Sheppard, Samuel K (2017). Recombination-mediated host adaptation by avian staphylococcus aureus. Genome Biology and Evolution.  ISSN 1759-6653.  9(4), s 830- 842 . doi: 10.1093/gbe/evx037
  • Pensar, Johan; Nyman, Henrik & Corander, Jukka (2017). Structure Learning of Contextual Markov Networks using Marginal Pseudo-likelihood. Scandinavian Journal of Statistics.  ISSN 0303-6898.  44(2), s 455- 479 . doi: 10.1111/sjos.12260
  • Pensar, Johan; Nyman, Henrik; Niiranen, Juha & Corander, Jukka (2017). Marginal pseudo-likelihood learning of discrete Markov network structures. Bayesian Analysis.  ISSN 1936-0975.  12(4), s 1195- 1215 . doi: 10.1214/16-BA1032
  • Reiseter, Silje; Gunnarsson, Ragnar; Aaløkken, Trond Mogens; Samersaw-Lund, May Brit; Mynarek, Georg; Corander, Jukka; Haydon, Joanna & Molberg, Øyvind (2017). Progression and mortality of interstitial lung disease in mixed connective tissue disease: a long-term observational nationwide cohort study.. Rheumatology.  ISSN 1462-0324.  57(2), s 255- 262 . doi: 10.1093/rheumatology/kex077
  • Reiseter, Silje; Gunnarsson, Ragnar; Corander, Jukka; Haydon, Joanna; Samersaw-Lund, May Brit; Aaløkken, Trond Mogens; Taraldsrud, Eli; Hetlevik, Siri Opsahl & Molberg, Øyvind (2017). Disease evolution in mixed connective tissue disease: Results from a long-term nationwide prospective cohort study. Arthritis Research & Therapy.  ISSN 1478-6354.  19(1) . doi: 10.1186/s13075-017-1494-7 Full text in Research Archive.
  • Skwark, Marcin J.; Croucher, Nicholas J.; Puranen, Santeri; Chewapreecha, Claire; Pesonen, Maiju; Xu, Ying Ying; Turner, Paul; Harris, Simon R.; Beres, Stephen B.; Musser, James M.; Parkhill, Julian; Bentley, Stephen D.; Aurell, Erik & Corander, Jukka (2017). Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. PLoS Genetics.  ISSN 1553-7390.  13:e1006508(2), s 1- 24 . doi: 10.1371/journal.pgen.1006508
  • Tietavainen, A; Gutmann, Michael U.; Keski-Vakkuri, Esko; Corander, Jukka & Hæggstrom, Edward (2017). Bayesian inference of physiologically meaningful parameters from body sway measurements. Scientific Reports.  ISSN 2045-2322.  7(1) . doi: 10.1038/s41598-017-02372-1
  • Wei, Lu; Pitaval, Renaud-Alexandre; Corander, Jukka & Tirkkonen, Olav (2017). From random matrix theory to coding theory: Volume of a metric ball in unitary group. IEEE Transactions on Information Theory.  ISSN 0018-9448.  63(5), s 2814- 2821 . doi: 10.1109/TIT.2017.2681900
  • Zheng, Zhong; Wei, Lu; Speicher, Roland; Müller, Ralf Reiner; Hamalainen, J. & Corander, Jukka (2017). Asymptotic analysis of rayleigh product channels: A free probability approach. IEEE Transactions on Information Theory.  ISSN 0018-9448.  63(3), s 1731- 1745 . doi: 10.1109/TIT.2016.2646699
  • Yang, Zhirong; Corander, Jukka & Oja, Erkki (2016). Low-rank doubly stochastic matrix decomposition for cluster analysis. Journal of machine learning research.  ISSN 1532-4435.  17
  • Beres, Stephen B; Kachroo, Priyanka; Nasser, Waleed; Olsen, Randall J; Zhu, Luchang; Flores, Anthony R; de la Riva, Ivan; Paez-Mayorga, Jesus; Jimenez, Francisco E; Cantu, Concepcion; Vuopio, Jaana; Jalava, Jari; Kristinsson, Karl G; Gottfredsson, Magnus; Corander, Jukka; Fittipaldi, Nahuel; Di Luca, Maria Chiara; Petrelli, Dezemona; Vitali, Luca A; Raiford, Annessa; Jenkins, Leslie & Musser, James M (2016). Transcriptome remodeling contributes to epidemic disease caused by the human pathogen Streptococcus pyogenes. mBio.  ISSN 2161-2129.  7(3) . doi: 10.1128/mBio.00403-16
  • Connor, Thomas R; Owen, Sian V; Langridge, Gemma; Connell, Steve; Nair, Satheesh; Reuter, Sandra; Dallman, Timothy J; Corander, Jukka; Tabing, Kristine C; Le Hello, Simon; Fookes, Maria; Doublet, Benoit; Zhou, Zhemin; Feltwell, Theresa; Ellington, Matthew J; Herrera, Silvia; Gilmour, Matthew; Cloeckaert, Axel; Achtman, Mark; Parkhill, Julian; Wain, John; De Pinna, Elizabeth; Weill, François-Xavier; Peters, Tansy & Thomson, Nick (2016). What’s in a name? Species-wide whole-genome sequencing resolves invasive and noninvasive lineages of Salmonella enterica serotype Paratyphi B. mBio.  ISSN 2161-2129.  7(4) . doi: 10.1128/mBio.00527-16
  • Corander, Jukka; Hyttinen, Antti; Kontinen, Juha; Pensar, Johan & Väänänen, Jouko (2016). A logical approach to context-specific independence. Lecture Notes in Computer Science.  ISSN 0302-9743.  9803, s 165- 182 . doi: 10.1007/978-3-662-52921-8_11
  • Gutmann, Michael & Corander, Jukka (2016). Bayesian Optimization for Likelihood-Free Inference of Simulator-Based Statistical Models. Journal of machine learning research.  ISSN 1532-4435.  17(125), s 1- 47
  • Heinävaara, Otte; Leppä-aho, Janne; Corander, Jukka & Honkela, Antti (2016). On the inconsistency of ℓ1-penalised sparse precision matrix estimation. BMC Bioinformatics.  ISSN 1471-2105.  17:448(S16), s 99- 107 . doi: 10.1186/s12859-016-1309-x
  • Lees, John A; Vehkala, Minna; Välimäki, Niko; Harris, Simon R; Chewapreecha, Claire; Croucher, Nicholas J; Marttinen, Pekka; Davies, Mark R.; Steer, Andrew C; Tong, Steven Y C; Honkela, Antti; Parkhill, Julian; Bentley, Stephen D & Corander, Jukka (2016). Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes. Nature Communications.  ISSN 2041-1723.  7 . doi: 10.1038/ncomms12797 Full text in Research Archive.
  • Llarena, Ann-Katrin; Zhang, Ji; Vehkala, Minna; Välimiäki, Niko; Hakkinen, Marjaana; Hänninen, Marja-Liisa; Roasto, Mati; Mäesaar, Mihkel; Taboada, Eduardo; Barker, Dillon; Garofolo, Giuliano; Cammà, Cesare; Di Giannatale, Elisabetta; Corander, Jukka & Rossi, Mirko (2016). Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion. Microbial Genomics.  ISSN 2057-5858.  2(10), s 1- 14 . doi: 10.1099/mgen.0.000088
  • McNally, Alan; Oren, Yaara; Kelly, Darren; Pascoe, Ben; Dunn, Steven; Sreecharan, Tristan; Vehkala, Minna; Välimäki, Niko; Prentice, Michael B; Ashour, Amgad; Avram, Oren; Pupko, Tal; Dobrindt, Ulrich; Literak, Ivan; Guenther, Sebastian; Schaufler, Katharina; Wieler, Lothar H; Zhiyong, Zong; Sheppard, Samuel K; McInerney, James O & Corander, Jukka (2016). Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations. PLoS Genetics.  ISSN 1553-7390.  12(9) . doi: 10.1371/journal.pgen.1006280 Full text in Research Archive.
  • Pitaval, Renaud-Alexandre; Wei, Lu; Tirkkonen, Olav & Corander, Jukka (2016). Volume of metric balls in high-dimensional complex grassmann manifolds. IEEE Transactions on Information Theory.  ISSN 0018-9448.  62(9), s 5105- 5116 . doi: 10.1109/TIT.2016.2594289
  • Howell, Kate J.; Weinert, Lucy A.; Chaudhuri, Roy R.; Luan, Shi-Lu; Peters, Sarah E.; Corander, Jukka; Harris, David; Angen, Øystein; Aragon, Virginia; Bensaid, Albert; Williamson, Susanna M.; Parkhill, Julian; Langford, Paul R.; Rycroft, Andrew N.; Wren, Brendan W.; Holden, Matthew T.G.; Tucker, Alexander W. & Maskell, Duncan J. (2014). The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis. BMC Genomics.  ISSN 1471-2164.  15:1179 . doi: 10.1186/1471-2164-15-1179

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  • Arredondo-Alonso, Sergio; Rogers, Malbert R.C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta; Corander, Jukka; Willems, Rob J.L. & Schürch, Anita C. (2019). Corrigendum: Mlplasmids: A user-friendly tool to predict plasmid-and chromosome-derived sequences for single species, (Microbial Genomics), (2018), 4, 10.1099/mgen.0.000224. Microbial Genomics.  ISSN 2057-5858.  5(1) . doi: 10.1099/mgen.0.000249
  • Smet, Annemieke; Yahara, Koji; Rossi, Mirko; Tay, Alfred; Backert, Steffen; Ensser, Armin; Fox, James G.; Flahou, Bram; Ducatelle, Richard; Haesebrouck, Freddy & Corander, Jukka (2019). Correction: Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (The ISME Journal, (2018), 12, 10, (2518-2531), 10.1038/s41396-018-0199-5). The ISME Journal.  ISSN 1751-7362. . doi: 10.1038/s41396-019-0380-5

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Published Apr. 11, 2016 12:29 PM - Last modified Jan. 31, 2019 8:48 AM