Trygve Brauns Leergaard

Professor - Division of Anatomy
Image of Trygve Brauns Leergaard
Norwegian version of this page
Phone +47 22851052
Room L-169
Username
Visiting address Dept. of Anatomy Domus Medica Gaustad Sognsvannsveien 9 0372 Oslo
Postal address Postboks 1105 Blindern 0317 Oslo

Academic interests

  • Neuroanatomy, brain connectivity mapping
  • Morphological phenotyping
  • Neuroinformatics and digital brain atlasing
  • Histological validation of neuroimaging methods

Courses taught

MEDSEM3A – macroscopic anatomy

IMB9345 – Neuroscience data integration through use of digital brain atlases

Background

  • MD, University of Leiden, The Netherlands, 1996
  • PhD, University of Oslo, Neuroscience, 2000

Work experience

  • 2006- : Deputy group leader, Neural Systems and Graphics Computing Laboratory, Experimental Division, Institute of Basic Medical Sciences, University of Oslo
  • 2004- : Deputy associate professor, Department of anatomy, Institute of Basic Medical Sciences, University of Oslo
  • 2002-2003: Research fellow, Department of Radiology, Massachusetts General Hospital, Nuclear Magnetic Resonance Center, Harvard Medical School, Boston, USA
  • 2001-2003: Postdoc fellow, Department of  Anatomy, Institute of Basic Medical Sciences, University of Oslo

Positions held

  • Guest Associate Editor, Frontiers in Neuroinformatics (2010-2011)
  • Member semester board (semesterutvalg) MEDSEM3A (2008- ), Faculty of Medicine, University of Oslo
  • Member advisory board (programrådet), The Faculty of Medicine, University of Oslo (2009- )
  • Key advisor for high throughput tissue processing unit at the Institute of Basic Medical Sciences, University of Oslo

Collaboration

  • Anders M. Dale, University of California, San Diego, USA
  • G. Allan Johnson, Center for In Vivo Microscopy, Duke University Medical Center, USA
  • Annemie Van der Linden, Bio-Imaging lab, University of Antwerp, Belgium
  • Stephan von Hörsten, Experimental Therapy, Friedrich-Alexander University, Erlangen, Germany
  • Jan Sijbers, Vision Lab, Department of Physics, University of Antwerp, Belgium
  • Menno P. Witter, The Kavli Institute for Systems Neuroscience & Centre for the Biology of Memory, Norwegian University of Science and Technology (NTNU), Trondheim
Tags: Brain and nervous system, Diagnostic imaging and intervention, Heart, Vasculature and lungs, Neuroanatomy, Cerebellum, Basal ganglia, Neurodegenerative disease models

Publications

  • Syverstad, Gry-Helen Enger; Melbye, Christopher; Puchades, Maja ; Leung, Siu Yi Doreen; Jacobsen, Øyvind & Shreyas, Rao [Show all 9 contributors for this article] (2021). Cerebral Amyloid Angiopathy in a Mouse Model of Alzheimer’s Disease Associates with Upregulated Angiopoietin and Downregulated Hypoxia-Inducible Factor. Journal of Alzheimer's Disease. ISSN 1387-2877. 83(4), p. 1651–1663. doi: 10.3233/JAD-210571.
  • Abrams, Mathew Birdsall; Bjaalie, Jan G.; Das, Samir; Egan, Gary F.; Ghosh, Satrajit S. & Goscinski, Wojtek J. [Show all 23 contributors for this article] (2021). A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics. ISSN 1539-2791. doi: 10.1007/s12021-020-09509-0. Full text in Research Archive
  • Allegra Mascaro, A. L.; Falotico, E.; Petkosi, S.; Pasquini, M.; Vannucci, L. & Tort-Colet, N. [Show all 23 contributors for this article] (2020). Experimental and Computational Study on Motor Control and Recovery After Stroke: Toward a Constructive Loop Between Experimental and Virtual Embodied Neuroscience . Frontiers in Systems Neuroscience. ISSN 1662-5137. 14. doi: 10.3389/fnsys.2020.00031. Full text in Research Archive
  • Bjerke, Ingvild Elise; Yates, Sharon Christine; Laja, Arthur; Witter, Menno; Puchades, Maja & Bjaalie, Jan G. [Show all 7 contributors for this article] (2020). Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain. iScience. ISSN 2589-0042. 24:101906(1), p. 1–52. doi: 10.1016/j.isci.2020.101906. Full text in Research Archive
  • Bjerke, Ingvild Elise; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2020). Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data. ISSN 2052-4463. 7. doi: 10.6084/m9.figshare.12199088.
  • Yates, Sharon Christine; Groeneboom, Nicolaas Ervik; Coello, Christopher; Lichtenthaler, Stefan F.; Kuhn, Peer-Hendrik & Demuth, Hans-Ulrich [Show all 12 contributors for this article] (2019). QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers in Neuroinformatics. ISSN 1662-5196. 13. doi: 10.3389/fninf.2019.00075. Full text in Research Archive
  • Post, Joakim Iver; Leergaard, Trygve B.; Ratz, Veronika; Walaas, S. Ivar; von Hörsten, Stephan & Nissen-Meyer, Lise Sofie Haug (2019). Differential Levels and Phosphorylation of Type 1 Inositol 1,4,5-Trisphosphate Receptor in Four Different Murine Models of Huntington Disease . Journal of Huntington's Disease. ISSN 1879-6397. 8(3), p. 271–289. doi: 10.3233/JHD-180301.
  • Osen, Kirsten Kjelsberg; Imad, Jala; Wennberg, Arvind Eirik; Papp, Eszter Agnes & Leergaard, Trygve Brauns (2019). Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion magnetic resonance imaging. NeuroImage. ISSN 1053-8119. 199, p. 38–56. doi: 10.1016/j.neuroimage.2019.05.016. Full text in Research Archive
  • Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja ; Checinska, Martyna; Kleven, Heidi & Jankowsky, Joanna L. [Show all 8 contributors for this article] (2019). Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data. ISSN 2052-4463. 6, p. 1–15. doi: 10.1038/sdata.2019.28.
  • Puchades, Maja ; Csúcs, Gergely; Ledergerber, Debora; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLOS ONE. ISSN 1932-6203. 14(5). doi: 10.1371/journal.pone.0216796. Full text in Research Archive
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi & Yates, Sharon Christine [Show all 9 contributors for this article] (2018). Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy. ISSN 1662-5129. 12. doi: 10.3389/fnana.2018.00082. Full text in Research Archive
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L & Fiorilli, J [Show all 11 contributors for this article] (2018). Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry. ISSN 0924-9338. 50, p. 70–76. doi: 10.1016/j.eurpsy.2018.02.0. Full text in Research Archive
  • Mughal, Awais; Zhang, Lili; Fayzullin, Artem; Server, Andrés; Li, Yuping & Wu, Yingxi [Show all 11 contributors for this article] (2018). Patterns of Invasive Growth in Malignant Gliomas - The Hippocampus Emerges as an Invasion-Spared Brain Region. Neoplasia. ISSN 1522-8002. 20(7), p. 643–656. doi: 10.1016/j.neo.2018.04.001. Full text in Research Archive
  • Stahl, Katja; Rahmani, Soulmaz; Prydz, Agnete; Skauli, Nadia; MacAulay, Nanna & Mylonakou, Maria-Niki [Show all 13 contributors for this article] (2018). Targeted deletion of the aquaglyceroporin AQP9 is protective in a mouse model of Parkinson's disease. PLOS ONE. ISSN 1932-6203. 13(3). doi: 10.1371/journal.pone.0194896. Full text in Research Archive
  • Schubert, N; Axer, M; Schober, M; Huynh, A; Huysegoms, M & Palomero-Gallagher, N [Show all 11 contributors for this article] (2016). 3D reconstructed cyto-, muscarinic M<sub>2</sub> receptor, and fiber architecture of the rat brain registered to the waxholm space atlas. Frontiers in Neuroanatomy. ISSN 1662-5129. 10(MAY). doi: 10.3389/fnana.2016.00051.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csúcs, Gergely & Bjaalie, Jan G. (2016). Brain-wide mapping of axonal connections: Workflow for automated detection and spatial analysis of labeling in microscopic sections. Frontiers in Neuroinformatics. ISSN 1662-5196. 10(11). doi: 10.3389/fninf.2016.00011. Full text in Research Archive
  • Yetman, Michael J.; Lillehaug, Sveinung; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Jankowsky, Joanna L. (2016). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function. ISSN 1863-2653. 221(4), p. 2231–2249. doi: 10.1007/s00429-015-1040-9.
  • Blackstad, Jan Sigurd Beddari; Osen, Kirsten Kjelsberg; Scharfman, Helen E.; Storm-Mathisen, Jon; Blackstad, Theodor & Leergaard, Trygve Brauns (2016). Observations on hippocampal mossy cells in mink (Neovison vison) with special reference to dendrites ascending to the granular and molecular layers. Hippocampus. ISSN 1050-9631. 26(2), p. 229–245. doi: 10.1002/hipo.22518.
  • Zakiewicz, Izabela Maria; Majka, Piotr; Wòjcik, Daniel K.; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2015). Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex. PLOS ONE. ISSN 1932-6203. 10(9). doi: 10.1371/journal.pone.0137571.
  • Boccara, Charlotte Nina; Kjønigsen, Lisa Jannicke; Hammer, Ingvild Marie F.; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Witter, Menno (2015). A three-plane architectonic atlas of the rat hippocampal region. Hippocampus. ISSN 1050-9631. 25(7), p. 838–857. doi: 10.1002/hipo.22407.
  • Vårbakken, Kjartan; Steen, Harald; Samuelsen, Gunnar; Dahl, Hans A; Leergaard, Trygve Brauns & Stuge, Britt (2015). Primary functions of the quadratus femoris and obturator externus muscles indicated from lengths and moment arms measured in mobilized cadavers. Clinical Biomechanics. ISSN 0268-0033. 30(3), p. 231–237. doi: 10.1016/j.clinbiomech.2015.02.004.
  • Kjønigsen, Lisa Jannicke; Lillehaug, Sveinung; Bjaalie, Jan G.; Witter, Menno & Leergaard, Trygve Brauns (2015). Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging. NeuroImage. ISSN 1053-8119. 108, p. 441–449. doi: 10.1016/j.neuroimage.2014.12.080. Full text in Research Archive
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2015). Addendum to “Waxholm Space atlas of the Sprague Dawley rat brain” [NeuroImage 97 (2014) 374-386]. NeuroImage. ISSN 1053-8119. 105, p. 561–562. doi: 10.1016/j.neuroimage.2014.10.017.
  • Vårbakken, Kjartan; Steen, Harald; Samuelsen, Gunnar; Dahl, Hans A; Leergaard, Trygve Brauns & Nordsletten, Lars [Show all 7 contributors for this article] (2014). Lengths of the external hip rotators in mobilized cadavers indicate the quadriceps coxa as a primary abductor and extensor of the flexed hip. Clinical Biomechanics. ISSN 0268-0033. 29(7), p. 794–802. doi: 10.1016/j.clinbiomech.2014.05.011.
  • Zakiewicz, Izabela Maria; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2014). Brain-wide map of efferent projections from rat barrel cortex. Frontiers in Neuroinformatics. ISSN 1662-5196. 8. doi: 10.3389/fninf.2014.00005.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2014). Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage. ISSN 1053-8119. 97, p. 374–386. doi: 10.1016/j.neuroimage.2014.04.001.
  • Nuruddin, Syed; Syverstad, Gry-Helen Enger; Lillehaug, Sveinung; Leergaard, Trygve Brauns; Nilsson, Lars & Ropstad, Erik [Show all 9 contributors for this article] (2014). Elevated mRNA-Levels of Gonadotropin-Releasing Hormone and Its Receptor in Plaque-Bearing Alzheimer's Disease Transgenic Mice. PLOS ONE. ISSN 1932-6203. 9(8). doi: 10.1371/journal.pone.0103607.
  • Pandya, Abhilash D.; Leergaard, Trygve Brauns; Dissen, Erik; Haraldsen, Guttorm & Spurkland, Anne (2014). Expression of the T cell-specific adapter protein in human tissues. Scandinavian Journal of Immunology. ISSN 0300-9475. 80(3), p. 169–179. doi: 10.1111/sji.12199.
  • Lillehaug, Sveinung; Syverstad, Gry-Helen Enger; Nilsson, Lars; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Torp, Reidun (2014). Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice. Neurobiology of Aging. ISSN 0197-4580. 35(3), p. 556–564. doi: 10.1016/j.neurobiolaging.2013.09.013.
  • White, NS; Leergaard, Trygve Brauns; D'Arceuil, Helen; Bjaalie, Jan G. & Dale, AM (2013). Probing tissue microstructure with Restriction Spectrum Imaging: Histological and theoretical validation. Human Brain Mapping. ISSN 1065-9471. 34(2), p. 327–346. doi: 10.1002/hbm.21454.
  • Nagelhus, Erlend Arnulf; Amiry-Moghaddam, Mahmood ; Bergersen, Linda Hildegard; Bjaalie, Jan G.; Eriksson, Jens & Gundersen, Vidar [Show all 12 contributors for this article] (2013). The glia doctrine: Addressing the role of glial cells in healthy brain ageing. Mechanisms of Ageing and Development. ISSN 0047-6374. 134(10), p. 449–459. doi: 10.1016/j.mad.2013.10.001.
  • Stensrud, Mats Julius; Chaudhry, Farrukh Abbas; Leergaard, Trygve Brauns; Bjaalie, Jan G. & Gundersen, Vidar (2013). Vesicular glutamate transporter-3 in the rodent brain: Vesicular colocalization with vesicular -aminobutyric acid transporter. Journal of Comparative Neurology. ISSN 0021-9967. 521(13), p. 3042–3056. doi: 10.1002/cne.23331.
  • Leergaard, Trygve Brauns; Hilgetag, Claus C & Sporns, Olaf (2012). Mapping the connectome: multi-level analysis of brain connectivity. Frontiers in Neuroinformatics. ISSN 1662-5196. doi: 10.3389/fninf.2012.00014.
  • Antonsen, Bjørnar Torske; Jiang, Yi; Veraart, Jelle; Qu, Hong; Nguyen, Huu Phuc & Sijbers, Jan [Show all 9 contributors for this article] (2012). Altered diffusion tensor imaging measurements in aged transgenic Huntington disease rats. Brain Structure and Function. ISSN 1863-2653. doi: 10.1007/s00429-012-0427-0.
  • Blockx, I; Verhoye, M; Van Audekerke, J; Bergwerf, I; Kane, John & Palacios, RDY [Show all 14 contributors for this article] (2012). Identification and characterization of Huntington related pathology: An in vivo DKI imaging study. NeuroImage. ISSN 1053-8119. 63(2), p. 653–662. doi: 10.1016/j.neuroimage.2012.06.032.
  • Veraart, Jelle; Leergaard, Trygve Brauns; Antonsen, Bjørnar; Van Hecke, Wim; Blockx, Ines & Jeurissen, Ben [Show all 11 contributors for this article] (2011). Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. NeuroImage. ISSN 1053-8119. 58(4), p. 975–983. doi: 10.1016/j.neuroimage.2011.06.063.

View all works in Cristin

  • Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida; Zehl, Lyuba; Blixhavn, Camilla Hagen & Davison, Andrew [Show all 17 contributors for this article] (2021). Data sharing via EBRAINS: why and how .
  • Schlegel, Ulrike; Köhnen, Stefan; Davison, Andrew P.; Najafi, Peyman; Weyers, Benjamin & Gründling, Jan [Show all 17 contributors for this article] (2021). openMINDS - flexible metadata models for neuroscience.
  • Puchades, Maja ; Dickscheid, Timo & Leergaard, Trygve B. (2021). Hands-on Session V: Brain Atlases.
  • Puchades, Maja ; Yates, Sharon Christine; Bjerke, Ingvild Elise; Groeneboom, Nicolaas; Csucs, Gergely & Leergaard, Trygve B. [Show all 7 contributors for this article] (2021). Implementing the QUINT workflow for spatial quantitative analysis of labelling in mice and rats.
  • Yates, Sharon Christine; Groeneboom, Nicolaas; Csucs, Gergely; Leergaard, Trygve B.; Kreshuk, Anna & Kutra, Dominik [Show all 8 contributors for this article] (2020). New functionalities i the QUINT workflow for brain atlas based image analysis.
  • Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba & Kjelsberg, Kasper [Show all 13 contributors for this article] (2020). Neuroscience community-gains from data sharing through the EBRAINS infrastructure.
  • Schlegel, Ulrike; Reiten, Ingrid; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba & Kjelsberg, Kasper [Show all 13 contributors for this article] (2020). EBRAINS data sharing: benefits and workflow.
  • Reiten, Ingrid; Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Aasebø, Ida Elisabeth Jørgensen & Yates, Sharon Christine [Show all 12 contributors for this article] (2020). Data sharing through the online EBRAINS platform: a new service for brain research.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan & Hilverling, Anna [Show all 19 contributors for this article] (2019). Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise & Schmid, Oliver [Show all 17 contributors for this article] (2019). Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Schlegel, Ulrike; Oliver, Schmid & Puchades, Maja [Show all 10 contributors for this article] (2019). EBRAINS fair data service: A novel infrastructure for making neuroscience data findable, accessible, interoperable, and reuseable.
  • Puchades, Maja ; Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Workflow for quantification and spatial analysis of labeling in large series of histological images from murine brains.
  • Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja & Bjaalie, Jan G. [Show all 7 contributors for this article] (2019). Find and explore rodent brain data using 3D atlases in the new EBRAINS infrastructure.
  • Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Puchades, Maja & Bjaalie, Jan G. (2019). Batch quantification and spatial analysis of labelling in microscopic rodent brain sections .
  • Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja & Bjaalie, Jan G. [Show all 7 contributors for this article] (2019). Infrastructure and workflow for integrating and navigating multi-scale and multi-modal murine neuroscience data using 3D digital brain reference atlases.
  • Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin & Bjerke, Ingvild Elise [Show all 11 contributors for this article] (2019). Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Markovic, Milica; Kleven, Heidi & Zafarnia, Sara [Show all 15 contributors for this article] (2018). HBP Curation service: Share your data via the Neuroinformatics platform.
  • Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica & Legouée, Elodie [Show all 20 contributors for this article] (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
  • Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica & Legouée, Elodie [Show all 20 contributors for this article] (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
  • Yates, Sharon Christine; Puchades, Maja ; kreshuk, anna; Kutra, Dominik; Leergaard, Trygve B. & Bjaalie, Jan G. [Show all 7 contributors for this article] (2018). HBP Analytic Workflow: from Microscopic Image Data to Extracted Features in Atlas Space.
  • von Linstow, Christian Ulrich; Yates, Sharon Christine; Leergaard, Trygve B.; Plank, A-C; von Hörsten, S. & Puchades, Maja [Show all 7 contributors for this article] (2018). Whole brain analysis of Huntingtin aggregates in the F344 transgenic rat model of Huntington’s disease.
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Bjaalie, Jan G. & Leergaard, Trygve B. (2018). Best practices for determining and documenting neuroanatomical locations in the rodent brain.
  • Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Mapping topographical organization in mouse brain subcortical axonal projections using Human Brain Project infrastructure.
  • Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi & Puchades, Maja [Show all 8 contributors for this article] (2018). Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure.
  • Leergaard, Trygve B. (2017). Building and using rodent brain reference atlases for integration of experimental data.
  • Timonidis, Nestor; Bakker, Rembrandt; Øvsthus, Martin; Garcia-Amado, M; Porrero, C & Leergaard, Trygve B. [Show all 8 contributors for this article] (2017). Towards predicting the full mesoconnectome based on data fusion.
  • Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj & Øvsthus, Martin [Show all 12 contributors for this article] (2017). Interactive tools for registering of 2D and 3D images to reference atlases.
  • Imad, Jala; Kleven, Heidi; Clascá, Francisco; Wennberg, Arvind Eirik; Osen, Kirsten Kjelsberg & Coello, Sebastian Christopher [Show all 11 contributors for this article] (2017). Enriching and adding detail to the Waxholm Space rat brain reference atlas.
  • Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen & Kleven, Heidi [Show all 18 contributors for this article] (2017). Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices.
  • Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
  • Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
  • Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2017). Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data .
  • Imad, Jala; Osen, Kirsten Kjelsberg; Clascá, Francisco; Wennberg, Arvind E.; Coello, Sebastian Christopher & Csúcs, Gergely [Show all 9 contributors for this article] (2017). Enriching and Adding Detail to the Waxholm Space Rat Brain Reference Atlas.
  • Yates, Sharon Christine; Puchades, Maja ; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike & Rossner, Steffen [Show all 8 contributors for this article] (2017). Workflow for automated quantification and spatial analysis of labelling in microscoping rodent brain sections.
  • Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja ; Telefont, Martin & Jeff, Muller [Show all 9 contributors for this article] (2017). Data integration through digital brain atlasing: Human Brain Project infrastructure.
  • Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2017). Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations.
  • Yates, Sharon Christine; Puchades, Maja ; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike & Rossner, Steffen [Show all 8 contributors for this article] (2017). Workflow for automated quantification and spatial analysis of labeling in microscoping rodent brain sections.
  • Puchades, Maja ; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise & Andersson, Krister [Show all 8 contributors for this article] (2017). Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space.
  • Puchades, Maja ; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely & Leergaard, Trygve Brauns [Show all 7 contributors for this article] (2017). Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases.
  • Leergaard, Trygve B. (2016). Navigating the rodent brain: An anatomist’s guide to assigning location to brain image data.
  • Puchades, Maja ; Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister; Csúcs, Gergely & Leergaard, Trygve Brauns [Show all 7 contributors for this article] (2016). Spatial registration of serial histological image data to reference brain atlases.
  • Leergaard, Trygve Brauns (2015). Hjerneforskning i den digitale tidsalder: Fremtidens hjerneatlas.
  • Blackstad, Jan Sigurd Beddari; Osen, Kirsten Kjelsberg; Scharfman, HE; Storm-Mathisen, Jon; Blackstad, Theodor W. & Leergaard, Trygve Brauns (2015). Hippocampal mossy cells in mink (Neovison vison).
  • Puchades, Maja Amedjkouh; Darine, Dmitri Aleksandrovitsj; Csúcs, Gergely; Lillehaug, Sveinung; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2015). Feeding rodent brain data to computational models through HBP spatial atlas templates and knowledge graph portal.
  • Schubert, N; Axer, M; Graessel, D; Schober, M; Huynh, A & Huysegoms, M [Show all 11 contributors for this article] (2015). 3D reconstructed fiber-, cyto- and receptorarchitecture of the rat brain transferred into the Waxholm Space atlas.
  • Leergaard, Trygve Brauns & Bjaalie, Jan G. (2014). Infrastructure for digital atlasing of mouse and rat brain: Rodent Brain WorkBench.
  • Leergaard, Trygve Brauns (2014). Navigating the rodent brain by digital atlasing.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj & Bjaalie, Jan G. (2014). Workflow for integration and analysis of histological data in rodent brain Waxholm Space. Frontiers in Neuroinformatics. ISSN 1662-5196. doi: 10.3389/conf.fninf.2014.18.00060.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj & Bjaalie, Jan G. (2014). Workflow for integration and analysis of histological data in rodent brain Waxholm Space.
  • Leergaard, Trygve Brauns; Coello, Christopher; Papp, Eszter Agnes; Ragan, Tim & Bjaalie, Jan G. (2014). Registration of serial two-photon data to rodent brain Waxholm Space. Frontiers in Neuroinformatics. ISSN 1662-5196. doi: 10.3389/conf.fninf.2014.18.00059.
  • Leergaard, Trygve Brauns; Coello, Christopher; Papp, Eszter Agnes; Ragan, Tim & Bjaalie, Jan G. (2014). Registration of serial two-photon data to rodent brain Waxholm Space.
  • Leergaard, Trygve Brauns; Lillehaug, Sveinung; Papp, Eszter Agnes; Coello, Christopher; Ragan, Tim & Bjaalie, Jan G. (2014). Waxholm Space atlas template enriched with serial two-photon and histological data.
  • Leergaard, Trygve Brauns; Yetman, Michael J.; Lillehaug, Sveinung; Bjaalie, Jan G. & Jankowsky, Joanna L. (2014). Transgene expression in the neuropsin tTA driver line is not restricted to the entorhinal cortex.
  • Leergaard, Trygve Brauns; Lillehaug, Sveinung; Yetman, Michael J.; Jankowsky, Joanna L. & Bjaalie, Jan G. (2014). Interactive brainwide atlas of tetracycline responsive trans-activator promoter mouse lines.
  • Bjaalie, Jan G. & Leergaard, Trygve Brauns (2014). Neuroscience in the information ages: Brain atlasing goes digital. META. ISSN 1890-1956. p. 14–17.
  • Syverstad, Gry-Helen Enger; Nuruddin, Syed; Lillehaug, Sveinung; Leergaard, Trygve B.; Haraldsen, Ira Hebold & Torp, Reidun (2013). Targeting gonadotroping-releasing hormone in Alzheimer’s disease.
  • Syverstad, Gry-Helen Enger; Lillehaug, Sveinung; Nilsson, Lars N. G.; Bjaalie, Jan G.; Leergaard, Trygve B. & Torp, Reidun (2013). Spatial distribution and variance of amyloid-beta load in middle-aged transgenic Alzheimer’s disease mice with both the Artic and Swedish AβPP mutations.
  • Bjaalie, Jan G.; Papp, Eszter Agnes; Kjonigsen, LJ; Johnson, GA; Witter, Menno & Leergaard, Trygve Brauns (2013). Waxholm Space Atlas of the rat brain with detailed hippocampal subdivisions.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Johnson, G. Allan & Bjaalie, Jan G. (2012). First generation Waxholm atlas of the Sprague-Dawley rat brain.
  • Leergaard, Trygve Brauns (2011). Interpreting morphological substrates of diffusion MRI: Histological validation approaches and 3D rat brain atlasing.
  • Zakiewicz, Izabela Maria; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2011). Neuroinformatics web applications for 3-D analysis of brain connectivity: anatomical organization of subcortical projections from whisker and forelimb regions of the rat somatosensory cortex. Frontiers in Neuroinformatics. ISSN 1662-5196. doi: 10.3389/conf.fninf.2011.08.00060.
  • Moene, Ivar Andre; Darine, Dmitri Aleksandrovitsj; Ramachandran, Muthuraja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2011). Rodent Brain Navigator: database and atlas system for microscopy and imaging data. Frontiers in Neuroinformatics. ISSN 1662-5196. doi: 10.3389/conf.fninf.2011.08.00159.
  • Kjønigsen, Lisa Jannicke; Leergaard, Trygve Brauns; Witter, Menno & Bjaalie, Jan G. (2011). Three-dimensional atlas framework for mapping of projections from the entorhinal cortex to the hippocampal formation in rat. Frontiers in Neuroinformatics. ISSN 1662-5196. doi: 10.3389/conf.fninf.2011.08.00129.
  • Papp, Eszter Agnes; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Volumetric atlasing in the rodent brain: connecting experimental image data to standard anatomical space. Faculty of Medicine, University of Oslo. ISSN 978-82-8377-194-7. Full text in Research Archive

View all works in Cristin

Published Apr. 13, 2011 2:40 PM - Last modified Mar. 15, 2019 2:38 PM

Research groups