Trygve Brauns Leergaard

Professor - Division of Anatomy
Image of Trygve Brauns Leergaard
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Phone +47 22851052
Room L-169
Username
Visiting address Dept. of Anatomy Domus Medica Gaustad Sognsvannsveien 9 0372 Oslo
Postal address Postboks 1105 Blindern 0317 Oslo

Academic interests

  • Neuroanatomy, brain connectivity mapping
  • Morphological phenotyping
  • Neuroinformatics and digital brain atlasing
  • Histological validation of neuroimaging methods

Courses taught

MEDSEM3A – macroscopic anatomy

IMB9345 – Neuroscience data integration through use of digital brain atlases

Background

  • MD, University of Leiden, The Netherlands, 1996
  • PhD, University of Oslo, Neuroscience, 2000

Work experience

  • 2006- : Deputy group leader, Neural Systems and Graphics Computing Laboratory, Experimental Division, Institute of Basic Medical Sciences, University of Oslo
  • 2004- : Deputy associate professor, Department of anatomy, Institute of Basic Medical Sciences, University of Oslo
  • 2002-2003: Research fellow, Department of Radiology, Massachusetts General Hospital, Nuclear Magnetic Resonance Center, Harvard Medical School, Boston, USA
  • 2001-2003: Postdoc fellow, Department of  Anatomy, Institute of Basic Medical Sciences, University of Oslo

Positions held

  • Guest Associate Editor, Frontiers in Neuroinformatics (2010-2011)
  • Member semester board (semesterutvalg) MEDSEM3A (2008- ), Faculty of Medicine, University of Oslo
  • Member advisory board (programrådet), The Faculty of Medicine, University of Oslo (2009- )
  • Key advisor for high throughput tissue processing unit at the Institute of Basic Medical Sciences, University of Oslo

Collaboration

  • Anders M. Dale, University of California, San Diego, USA
  • G. Allan Johnson, Center for In Vivo Microscopy, Duke University Medical Center, USA
  • Annemie Van der Linden, Bio-Imaging lab, University of Antwerp, Belgium
  • Stephan von Hörsten, Experimental Therapy, Friedrich-Alexander University, Erlangen, Germany
  • Jan Sijbers, Vision Lab, Department of Physics, University of Antwerp, Belgium
  • Menno P. Witter, The Kavli Institute for Systems Neuroscience & Centre for the Biology of Memory, Norwegian University of Science and Technology (NTNU), Trondheim
Tags: Brain and nervous system, Diagnostic imaging and intervention, Heart, Vasculature and lungs, Neuroanatomy, Cerebellum, Basal ganglia, Neurodegenerative disease models

Publications

  • Blixhavn, Camilla Hagen; Reiten, Ingrid; Kleven, Heidi; Øvsthus, Martin; Yates, Sharon Christine & Schlegel, Ulrike [Show all 11 contributors for this article] (2024). The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. Frontiers in Neuroinformatics. ISSN 1662-5196. 18. doi: 10.3389/fninf.2024.1284107.
  • Reiten, Ingrid; Olsen, Grethe Mari; Bjaalie, Jan G.; Witter, Menno Peter & Leergaard, Trygve B. (2023). The efferent connections of theorbitofrontal, posterior parietal,and insular cortex of the rat brain. Scientific Data. ISSN 2052-4463. 10(645), p. 1–17. doi: 10.1038/s41597-023-02527-y. Full text in Research Archive
  • Bjerke, Ingvild Elise; Yates, Sharon Christine; Carey, Harry; Bjaalie, Jan G. & Leergaard, Trygve B. (2023). Scaling up cell-counting efforts in neuroscience through semi-automated methods. iScience. ISSN 2589-0042. 26(9). doi: 10.1016/j.isci.2023.107562. Full text in Research Archive
  • Kleven, Heidi; Gillespie, Thomas; Zehl, Lyuba; Dickscheid, Timo; Bjaalie, Jan G. & Maryann E., Martone [Show all 7 contributors for this article] (2023). AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures. Scientific Data. ISSN 2052-4463. 10(1). doi: 10.1038/s41597-023-02389-4. Full text in Research Archive
  • Blixhavn, Camilla Hagen; Haug, Finn-Mogens Smejda; Kleven, Heidi; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2023). A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia. Scientific Data. ISSN 2052-4463. 10(150). doi: 10.1038/s41597-023-02012-6. Full text in Research Archive
  • Kleven, Heidi; Reiten, Ingrid; Blixhavn, Camilla Hagen; Schlegel, Ulrike; Øvsthus, Martin & Papp, Eszter Agnes [Show all 10 contributors for this article] (2023). A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting. Frontiers in Neuroinformatics. ISSN 1662-5196. 17. doi: 10.3389/fninf.2023.1154080. Full text in Research Archive
  • Kleven, Heidi; Bjerke, Ingvild Elise; Clascá, Francisco; Groenewegen, Henk J.; Bjaalie, Jan G. & Leergaard, Trygve B. (2023). Waxholm Space atlas of the rat brain: A 3D atlas supporting data analysis and integration. Nature Methods. ISSN 1548-7091. 20, p. 1822–1829. doi: 10.1038/s41592-023-02034-3. Full text in Research Archive
  • Gurdon, Brianna; Yates, Sharon Christine; Csucs, Gergely; Groeneboom, Nicolaas; Hadad, Niran & Telpoukhovskaia, Maria [Show all 19 contributors for this article] (2023). Detecting the effect of genetic diversity on brain composition in an Alzheimer's disease mouse model. bioRxiv. ISSN 2692-8205. doi: 10.1101/2023.02.27.530226.
  • Bjerke, Ingvild Elise; Cullity, E. R.; Kjelsberg, Kasper; Charan, K M; Leergaard, Trygve B. & Kim, J. H. (2022). DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains. Scientific Data. ISSN 2052-4463. 9, p. 1–11. doi: 10.1038/s41597-022-01268-8. Full text in Research Archive
  • Leergaard, Trygve B. & Bjaalie, Jan G. (2022). Atlas-based data integration for mapping the connections and architecture of the brain. Science. ISSN 0036-8075. 378(6619), p. 488–492. doi: 10.1126/science.abq2594. Full text in Research Archive
  • Kim, Jeong-Yeon; Manna, Dipankar; Etscheid, Michael; Leergaard, Trygve Brauns & Kanse, Sandip (2022). Factor VII activating protease (FSAP) inhibits the outcome of ischemic stroke in mouse models. The FASEB Journal. ISSN 0892-6638. 36(10). doi: 10.1096/fj.202200828r. Full text in Research Archive
  • Mehlum, Camilla Sivesind; Mahmood, Hanan; Ellingsen, Kristoffer Glenne; Øyen, Ole Morten; Leergaard, Trygve B. & Spurkland, Anne (2022). Self-reported anatomy skills among Norwegian physicians - Need for improved postgraduate teaching provision. European Journal of Anatomy (EJA). ISSN 1136-4890. 26(4), p. 465–476. doi: 10.52083/GQLP6804.
  • Blackstad, Jan Sigurd Beddari; Osen, Kirsten Kjelsberg & Leergaard, Trygve Brauns (2022). The fibro- and cyto-architecture demarcating the border between the dentate gyrus and CA3 in sheep (Ovis aries) and domestic pig (Sus scrofa domesticus). Hippocampus. ISSN 1050-9631. 32(9), p. 639–659. doi: 10.1002/hipo.23457. Full text in Research Archive
  • Tocco, Chiara; Øvsthus, Martin; Bjaalie, Jan G.; Leergaard, Trygve B. & Studer, Michèle (2022). The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1. Development. ISSN 0950-1991. 149(5). doi: 10.1242/dev.200026. Full text in Research Archive
  • Syverstad, Gry-Helen Enger; Melbye, Christoffer; Puchades, Maja ; Leung, Siu Yi Doreen; Jacobsen, Øyvind & Shreyas, Rao [Show all 9 contributors for this article] (2021). Cerebral Amyloid Angiopathy in a Mouse Model of Alzheimer’s Disease Associates with Upregulated Angiopoietin and Downregulated Hypoxia-Inducible Factor. Journal of Alzheimer's Disease. ISSN 1387-2877. 83(4), p. 1651–1663. doi: 10.3233/JAD-210571. Full text in Research Archive
  • Abrams, Mathew Birdsall; Bjaalie, Jan G.; Das, Samir; Egan, Gary F.; Ghosh, Satrajit S. & Goscinski, Wojtek J. [Show all 23 contributors for this article] (2021). A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics. ISSN 1539-2791. doi: 10.1007/s12021-020-09509-0. Full text in Research Archive
  • Allegra Mascaro, A. L.; Falotico, E.; Petkosi, S.; Pasquini, M.; Vannucci, L. & Tort-Colet, N. [Show all 23 contributors for this article] (2020). Experimental and Computational Study on Motor Control and Recovery After Stroke: Toward a Constructive Loop Between Experimental and Virtual Embodied Neuroscience . Frontiers in Systems Neuroscience. ISSN 1662-5137. 14. doi: 10.3389/fnsys.2020.00031. Full text in Research Archive
  • Bjerke, Ingvild Elise; Yates, Sharon Christine; Laja, Arthur; Witter, Menno; Puchades, Maja & Bjaalie, Jan G. [Show all 7 contributors for this article] (2020). Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain. iScience. ISSN 2589-0042. 24:101906(1), p. 1–52. doi: 10.1016/j.isci.2020.101906. Full text in Research Archive
  • Bjerke, Ingvild Elise; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2020). Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data. ISSN 2052-4463. 7. doi: 10.6084/m9.figshare.12199088.
  • Yates, Sharon Christine; Groeneboom, Nicolaas Ervik; Coello, Christopher; Lichtenthaler, Stefan F.; Kuhn, Peer-Hendrik & Demuth, Hans-Ulrich [Show all 12 contributors for this article] (2019). QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers in Neuroinformatics. ISSN 1662-5196. 13. doi: 10.3389/fninf.2019.00075. Full text in Research Archive
  • Post, Joakim Iver; Leergaard, Trygve B.; Ratz, Veronika; Walaas, S. Ivar; von Hörsten, Stephan & Nissen-Meyer, Lise Sofie Haug (2019). Differential Levels and Phosphorylation of Type 1 Inositol 1,4,5-Trisphosphate Receptor in Four Different Murine Models of Huntington Disease . Journal of Huntington's Disease. ISSN 1879-6397. 8(3), p. 271–289. doi: 10.3233/JHD-180301.
  • Osen, Kirsten Kjelsberg; Imad, Jala; Wennberg, Arvind Eirik; Papp, Eszter Agnes & Leergaard, Trygve Brauns (2019). Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion magnetic resonance imaging. NeuroImage. ISSN 1053-8119. 199, p. 38–56. doi: 10.1016/j.neuroimage.2019.05.016. Full text in Research Archive
  • Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja ; Checinska, Martyna; Kleven, Heidi & Jankowsky, Joanna L. [Show all 8 contributors for this article] (2019). Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data. ISSN 2052-4463. 6, p. 1–15. doi: 10.1038/sdata.2019.28.
  • Puchades, Maja ; Csúcs, Gergely; Ledergerber, Debora; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLOS ONE. ISSN 1932-6203. 14(5). doi: 10.1371/journal.pone.0216796. Full text in Research Archive
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi & Yates, Sharon Christine [Show all 9 contributors for this article] (2018). Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy. ISSN 1662-5129. 12. doi: 10.3389/fnana.2018.00082. Full text in Research Archive
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L & Fiorilli, J [Show all 11 contributors for this article] (2018). Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry. ISSN 0924-9338. 50, p. 70–76. doi: 10.1016/j.eurpsy.2018.02.004. Full text in Research Archive
  • Mughal, Awais; Zhang, Lili; Fayzullin, Artem; Server, Andrés; Li, Yuping & Wu, Yingxi [Show all 11 contributors for this article] (2018). Patterns of Invasive Growth in Malignant Gliomas - The Hippocampus Emerges as an Invasion-Spared Brain Region. Neoplasia. ISSN 1522-8002. 20(7), p. 643–656. doi: 10.1016/j.neo.2018.04.001. Full text in Research Archive
  • Stahl, Katja; Rahmani, Soulmaz; Prydz, Agnete; Skauli, Nadia; MacAulay, Nanna & Mylonakou, Maria-Niki [Show all 13 contributors for this article] (2018). Targeted deletion of the aquaglyceroporin AQP9 is protective in a mouse model of Parkinson's disease. PLOS ONE. ISSN 1932-6203. 13(3). doi: 10.1371/journal.pone.0194896. Full text in Research Archive
  • Schubert, N; Axer, M; Schober, M; Huynh, A; Huysegoms, M & Palomero-Gallagher, N [Show all 11 contributors for this article] (2016). 3D reconstructed cyto-, muscarinic M<sub>2</sub> receptor, and fiber architecture of the rat brain registered to the waxholm space atlas. Frontiers in Neuroanatomy. ISSN 1662-5129. 10(MAY). doi: 10.3389/fnana.2016.00051.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csúcs, Gergely & Bjaalie, Jan G. (2016). Brain-wide mapping of axonal connections: Workflow for automated detection and spatial analysis of labeling in microscopic sections. Frontiers in Neuroinformatics. ISSN 1662-5196. 10(11). doi: 10.3389/fninf.2016.00011. Full text in Research Archive
  • Yetman, Michael J.; Lillehaug, Sveinung; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Jankowsky, Joanna L. (2016). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function. ISSN 1863-2653. 221(4), p. 2231–2249. doi: 10.1007/s00429-015-1040-9.
  • Blackstad, Jan Sigurd Beddari; Osen, Kirsten Kjelsberg; Scharfman, Helen E.; Storm-Mathisen, Jon; Blackstad, Theodor & Leergaard, Trygve Brauns (2016). Observations on hippocampal mossy cells in mink (Neovison vison) with special reference to dendrites ascending to the granular and molecular layers. Hippocampus. ISSN 1050-9631. 26(2), p. 229–245. doi: 10.1002/hipo.22518.
  • Zakiewicz, Izabela Maria; Majka, Piotr; Wòjcik, Daniel K.; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2015). Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex. PLOS ONE. ISSN 1932-6203. 10(9). doi: 10.1371/journal.pone.0137571.
  • Boccara, Charlotte Nina; Kjønigsen, Lisa Jannicke; Hammer, Ingvild Marie F.; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Witter, Menno (2015). A three-plane architectonic atlas of the rat hippocampal region. Hippocampus. ISSN 1050-9631. 25(7), p. 838–857. doi: 10.1002/hipo.22407.
  • Vårbakken, Kjartan; Steen, Harald; Samuelsen, Gunnar; Dahl, Hans A; Leergaard, Trygve Brauns & Stuge, Britt (2015). Primary functions of the quadratus femoris and obturator externus muscles indicated from lengths and moment arms measured in mobilized cadavers. Clinical Biomechanics. ISSN 0268-0033. 30(3), p. 231–237. doi: 10.1016/j.clinbiomech.2015.02.004.
  • Kjønigsen, Lisa Jannicke; Lillehaug, Sveinung; Bjaalie, Jan G.; Witter, Menno & Leergaard, Trygve Brauns (2015). Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging. NeuroImage. ISSN 1053-8119. 108, p. 441–449. doi: 10.1016/j.neuroimage.2014.12.080. Full text in Research Archive
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2015). Addendum to “Waxholm Space atlas of the Sprague Dawley rat brain” [NeuroImage 97 (2014) 374-386]. NeuroImage. ISSN 1053-8119. 105, p. 561–562. doi: 10.1016/j.neuroimage.2014.10.017.

View all works in Cristin

  • Reiten, Ingrid; Olsen, Grete; Bjaalie, Jan G.; Witter, Menno Peter & Leergaard, Trygve B. (2023). The efferent connections of the orbitofrontal, posterior parietal and insular cortices in the rat: FAIR tract tracing data enabled by EBRAINS.
  • Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida; van Swieten, Maaike M. H.; Davison, Andrew P. & Zehl, Lyuba [Show all 11 contributors for this article] (2022). Share FAIR neuroscience data using the EBRAINS curation services.
  • Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida; Davison, Andrew P.; Zehl, Lyuba & Schmid, Oliver [Show all 10 contributors for this article] (2022). Share FAIR neuroscience data using the EBRAINS curation services.
  • Reiten, Ingrid & Leergaard, Trygve Brauns (2022). Digitisation, sharing and atlas registration of tract tracing histological sections.
  • Leergaard, Trygve B.; Bjerke, Ingvild Elise; Bjaalie, Jan G.; Palomero-Gallagher, Nicola; Puchades, Maja & Carey, Harry [Show all 7 contributors for this article] (2022). Neuroscience data integration through use of digital brain atlases .
  • Puchades, Maja ; Reiten, Ingrid; Destexhe, Alain; Palomero-Gallagher, Nicola; Ruikes, Thijs & Leergaard, Trygve B. [Show all 7 contributors for this article] (2022). Workshop: Towards exploration of disease mechanisms in animal models: atlases, analysis, modelling and simulation.
  • Bjerke, Ingvild Elise; Imad, Jala; Clascá, Francisco; Groenewegen, Henk J.; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2022). Waxholm Space atlas of the Sprague Dawley rat brain version 4: A volumetric atlas enabling data integration and analysis.
  • Puchades, Maja ; Yates, Sharon Christine; Groeneboom, Nicolaas; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj & Carey, Harry [Show all 8 contributors for this article] (2022). EBRAINS tools for rodent brain atlasing.
  • Bjerke, Ingvild Elise; Leergaard, Trygve B.; Bjaalie, Jan G. & Kim, Jee Hyun (2022). Quantitative map of dopamine 1- and 2-receptor positive cells in the developing mouse forebrain.
  • Leergaard, Trygve B.; Puchades, Maja ; Kleven, Heidi & Bjerke, Ingvild Elise (2022). HBP Brain Matters webinar #12 "Rodent Brain Atlasing".
  • Bjerke, Ingvild Elise; Cullity, Ellen Rose; Kjelsberg, Kasper; Charan, Kristel; Leergaard, Trygve B. & Kim, Jee Hyun (2022). Map of dopamine 1- and 2-receptor positive cells in the developing mouse forebrain.
  • Schlegel, Ulrike; Köhnen, Stefan; Davison, Andrew; Najafi, Peyman; Weyers, Benjamin & Gründling, Jan [Show all 16 contributors for this article] (2022). openMINDS - flexible metadata models for neuroscience.
  • Blixhavn, Camilla Hagen; Finn-Mogens S., Haug; Kleven, Heidi; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2022). Multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia stained with Timm's sulphide silver method.
  • Schlegel, Ulrike; Hjallar, Viktor A.; Lensjø, Kristian; Uggerud, Ida Margrethe; Bjaalie, Jan G. & Hvoslef-Eide, Martha [Show all 8 contributors for this article] (2022). Mapping of parahippocampal and visual neural networks in mice: Preliminary evidence for feedback projections from perirhinal cortex to visual areas.
  • Øyen, Ole Morten; Spurkland, Anne & Leergaard, Trygve B. (2022). Bedre etterutdanning i anatomi for norske klinikere. Tidsskrift for Den norske legeforening. ISSN 0029-2001. 142(11). doi: 10.4045/tidsskr.22.0350.
  • Leergaard, Trygve B.; Bjerke, Ingvild Elise; Palomero-Gallagher, Nicola; Witter, Menno; Dickscheid, Timo & Puchades, Maja [Show all 7 contributors for this article] (2021). Neuroscience data integration through use of digital brain atlases.
  • Abrams, Mathew Birdsall; Bjaalie, Jan G.; Das, Samir; Egan, Gary F.; Ghosh, Satrajit S. & Goscinski, Wojtek J. [Show all 23 contributors for this article] (2021). Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility (Neuroinformatics, (2021), 10.1007/s12021-020-09509-0). Neuroinformatics. ISSN 1539-2791. doi: 10.1007/s12021-021-09522-x.
  • Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida; Zehl, Lyuba; Blixhavn, Camilla Hagen & Davison, Andrew [Show all 17 contributors for this article] (2021). Data sharing via EBRAINS: why and how .
  • Schlegel, Ulrike; Köhnen, Stefan; Davison, Andrew P.; Najafi, Peyman; Weyers, Benjamin & Gründling, Jan [Show all 17 contributors for this article] (2021). openMINDS - flexible metadata models for neuroscience.
  • Puchades, Maja ; Dickscheid, Timo & Leergaard, Trygve B. (2021). Hands-on Session V: Brain Atlases.
  • Puchades, Maja ; Yates, Sharon Christine; Bjerke, Ingvild Elise; Groeneboom, Nicolaas; Csucs, Gergely & Leergaard, Trygve B. [Show all 7 contributors for this article] (2021). Implementing the QUINT workflow for spatial quantitative analysis of labelling in mice and rats.
  • Yates, Sharon Christine; Groeneboom, Nicolaas; Csucs, Gergely; Leergaard, Trygve B.; Kreshuk, Anna & Kutra, Dominik [Show all 8 contributors for this article] (2020). New functionalities i the QUINT workflow for brain atlas based image analysis.
  • Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba & Kjelsberg, Kasper [Show all 13 contributors for this article] (2020). Neuroscience community-gains from data sharing through the EBRAINS infrastructure.
  • Schlegel, Ulrike; Reiten, Ingrid; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba & Kjelsberg, Kasper [Show all 13 contributors for this article] (2020). EBRAINS data sharing: benefits and workflow.
  • Reiten, Ingrid; Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Aasebø, Ida Elisabeth Jørgensen & Yates, Sharon Christine [Show all 12 contributors for this article] (2020). Data sharing through the online EBRAINS platform: a new service for brain research.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan & Hilverling, Anna [Show all 19 contributors for this article] (2019). Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise & Schmid, Oliver [Show all 17 contributors for this article] (2019). Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Schlegel, Ulrike; Oliver, Schmid & Puchades, Maja [Show all 10 contributors for this article] (2019). EBRAINS fair data service: A novel infrastructure for making neuroscience data findable, accessible, interoperable, and reuseable.
  • Puchades, Maja ; Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Workflow for quantification and spatial analysis of labeling in large series of histological images from murine brains.
  • Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja & Bjaalie, Jan G. [Show all 7 contributors for this article] (2019). Find and explore rodent brain data using 3D atlases in the new EBRAINS infrastructure.
  • Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Puchades, Maja & Bjaalie, Jan G. (2019). Batch quantification and spatial analysis of labelling in microscopic rodent brain sections .
  • Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja & Bjaalie, Jan G. [Show all 7 contributors for this article] (2019). Infrastructure and workflow for integrating and navigating multi-scale and multi-modal murine neuroscience data using 3D digital brain reference atlases.
  • Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin & Bjerke, Ingvild Elise [Show all 11 contributors for this article] (2019). Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases.
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Markovic, Milica; Kleven, Heidi & Zafarnia, Sara [Show all 15 contributors for this article] (2018). HBP Curation service: Share your data via the Neuroinformatics platform.
  • Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica & Legouée, Elodie [Show all 20 contributors for this article] (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
  • Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica & Legouée, Elodie [Show all 20 contributors for this article] (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
  • Yates, Sharon Christine; Puchades, Maja ; kreshuk, anna; Kutra, Dominik; Leergaard, Trygve B. & Bjaalie, Jan G. [Show all 7 contributors for this article] (2018). HBP Analytic Workflow: from Microscopic Image Data to Extracted Features in Atlas Space.
  • von Linstow, Christian Ulrich; Yates, Sharon Christine; Leergaard, Trygve B.; Plank, A-C; von Hörsten, S. & Puchades, Maja [Show all 7 contributors for this article] (2018). Whole brain analysis of Huntingtin aggregates in the F344 transgenic rat model of Huntington’s disease.
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Bjaalie, Jan G. & Leergaard, Trygve B. (2018). Best practices for determining and documenting neuroanatomical locations in the rodent brain.
  • Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Mapping topographical organization in mouse brain subcortical axonal projections using Human Brain Project infrastructure.
  • Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi & Puchades, Maja [Show all 8 contributors for this article] (2018). Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure.
  • Leergaard, Trygve B. (2017). Building and using rodent brain reference atlases for integration of experimental data.
  • Timonidis, Nestor; Bakker, Rembrandt; Øvsthus, Martin; Garcia-Amado, M; Porrero, C & Leergaard, Trygve B. [Show all 8 contributors for this article] (2017). Towards predicting the full mesoconnectome based on data fusion.
  • Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj & Øvsthus, Martin [Show all 12 contributors for this article] (2017). Interactive tools for registering of 2D and 3D images to reference atlases.
  • Imad, Jala; Kleven, Heidi; Clascá, Francisco; Wennberg, Arvind Eirik; Osen, Kirsten Kjelsberg & Coello, Sebastian Christopher [Show all 11 contributors for this article] (2017). Enriching and adding detail to the Waxholm Space rat brain reference atlas.
  • Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen & Kleven, Heidi [Show all 18 contributors for this article] (2017). Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices.
  • Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
  • Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
  • Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve B. (2017). Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data .
  • Imad, Jala; Osen, Kirsten Kjelsberg; Clascá, Francisco; Wennberg, Arvind E.; Coello, Sebastian Christopher & Csúcs, Gergely [Show all 9 contributors for this article] (2017). Enriching and Adding Detail to the Waxholm Space Rat Brain Reference Atlas.
  • Yates, Sharon Christine; Puchades, Maja ; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike & Rossner, Steffen [Show all 8 contributors for this article] (2017). Workflow for automated quantification and spatial analysis of labelling in microscoping rodent brain sections.
  • Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja ; Telefont, Martin & Jeff, Muller [Show all 9 contributors for this article] (2017). Data integration through digital brain atlasing: Human Brain Project infrastructure.
  • Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja ; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2017). Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations.
  • Yates, Sharon Christine; Puchades, Maja ; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike & Rossner, Steffen [Show all 8 contributors for this article] (2017). Workflow for automated quantification and spatial analysis of labeling in microscoping rodent brain sections.
  • Puchades, Maja ; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise & Andersson, Krister [Show all 8 contributors for this article] (2017). Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space.
  • Puchades, Maja ; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely & Leergaard, Trygve Brauns [Show all 7 contributors for this article] (2017). Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases.
  • Leergaard, Trygve B. (2016). Navigating the rodent brain: An anatomist’s guide to assigning location to brain image data.
  • Puchades, Maja ; Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister; Csúcs, Gergely & Leergaard, Trygve Brauns [Show all 7 contributors for this article] (2016). Spatial registration of serial histological image data to reference brain atlases.
  • Leergaard, Trygve Brauns (2015). Hjerneforskning i den digitale tidsalder: Fremtidens hjerneatlas.
  • Blackstad, Jan Sigurd Beddari; Osen, Kirsten Kjelsberg; Scharfman, HE; Storm-Mathisen, Jon; Blackstad, Theodor W. & Leergaard, Trygve Brauns (2015). Hippocampal mossy cells in mink (Neovison vison).
  • Puchades, Maja Amedjkouh; Darine, Dmitri Aleksandrovitsj; Csúcs, Gergely; Lillehaug, Sveinung; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2015). Feeding rodent brain data to computational models through HBP spatial atlas templates and knowledge graph portal.
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  • Papp, Eszter Agnes; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Volumetric atlasing in the rodent brain: connecting experimental image data to standard anatomical space. Universitetet i Oslo. ISSN 978-82-8377-194-7. Full text in Research Archive

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Published Apr. 13, 2011 2:40 PM - Last modified Nov. 24, 2023 6:58 PM