Anthony Mathelier

Norwegian version of this page
Phone
+47 22840561
Username
Visiting address
Gaustadalléen 21
Forskningsparken
0349 OSLO
Postal address
Postboks 1137 Blindern
0318 Oslo
Publications
- Khan, Aziz; Riudavets Puig, Rafael; Boddie, Paul & Mathelier, Anthony (2020). BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences.. Bioinformatics. ISSN 1367-4803.
- Pladsen, Arne Valebjørg; Nilsen, Gro; Rueda, Oscar M.; Aure, Miriam Ragle; Borgan, Ørnulf; Liestøl, Knut; Vitelli, Valeria; Frigessi Di Rattalma, Arnoldo; Langerød, Anita; Mathelier, Anthony; Engebråten, Olav; Kristensen, Vessela N.; Wedge, David C.; Van Loo, Peter; Caldas, Carlos; Børresen-Dale, Anne-Lise; Russnes, Hege Elisabeth Giercksky & Lingjærde, Ole Christian (2020). DNA copy number motifs are strong and independent predictors of survival in breast cancer. Communications Biology. ISSN 2399-3642. 3 . doi: 10.1038/s42003-020-0884-6 Full text in Research Archive.
- Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana; Holden, Lars; Gheorghe, Marius; Mathelier, Anthony; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2020). Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Briefings in Bioinformatics. ISSN 1467-5463. s 1- 8 . doi: 10.1093/bib/bbz083
- Fornes, Oriol; Castro Mondragón, Jaime Abraham; Khan, Aziz; Robin van der, Lee; Zhang, Xi; A. Richmond, Phillip; P. Modi, Bhavi; Correard, Solenne; Gheorghe, Marius; Baranasic, Damir; Santana-Garcia, Walter; Tan, Ge; Cheneby, Jeanne; Ballester, Benoit; Parcy, François; Sandelin, Albin; Lenhard, Boris; Wasserman, Wyeth W. & Mathelier, Anthony (2019). JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Research. ISSN 0305-1048. 48, s 87- 92 . doi: 10.1093/nar/gkz1001 Full text in Research Archive. Show summary
- Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind; Hackenberg, Michael; Friedländer, Marc R. & Peterson, Kevin J. (2019). MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Research. ISSN 0305-1048. 48(D1), s D132- D141 . doi: 10.1093/nar/gkz885 Full text in Research Archive.
- Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony (2019). A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research. ISSN 0305-1048. 47(4), s e21 . doi: 10.1093/nar/gky1210 Full text in Research Archive.
- Ha, Thomas J.; Zhang, Peter G.Y.; Robert, Remi; Yeung, Joanna; Swanson, Douglas J.; Mathelier, Anthony; Wasserman, Wyeth W.; Im, Sujin; Itoh, Masayoshi; Kawaji, Hideya; Lassmann, Timo; Daub, Carsten O.; Arner, Erik; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R.R. & Goldowitz, Daniel (2019). Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis. BMC Genomics. ISSN 1471-2164. 20(718), s 1- 17 . doi: 10.1186/s12864-019-6063-9 Full text in Research Archive.
- Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony; Thiede, Bernd; Walker, Suzanne & Mills, Ian Geoffrey (2019). High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics. ISSN 1838-7640. 9(8), s 2183- 2197 . doi: 10.7150/thno.30834 Full text in Research Archive.
- Korecki, Andrea J; Hickmott, Jack W; Lam, Siu Ling; Dreolini, Lisa; Mathelier, Anthony; Baker, Oliver; Kuehne, Claudia; Bonaguro, Russell J; Smith, Jillian; Tan, Chin-Vern; Zhou, Michelle; Goldowitz, Daniel; Deussing, Jan M; Stewart, A. Francis; Wasserman, Wyeth W.; Holt, Robert A & Simpson, Elizabeth M (2019). Twenty-seven tamoxifen-inducible icre-driver mouse strains for eye and brain, including seventeen carrying a new inducible-first constitutive-ready allele. Genetics. ISSN 0016-6731. 211(4), s 1155- 1177 . doi: 10.1534/genetics.119.301984
- Fornes, Oriol; Gheorghe, Marius; Richmond, Phillip A.; Arenillas, David J.; Wasserman, Wyeth W. & Mathelier, Anthony (2018). MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations. Scientific Data. ISSN 2052-4463. 5:180141, s 1- 7 . doi: 10.1038/sdata.2018.141 Full text in Research Archive.
- Khan, Aziz; Mathelier, Anthony & Zhang, Xuegong (2018). Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers. Epigenetics. ISSN 1559-2294. 13(9), s 910- 922 . doi: 10.1080/15592294.2018.1514231
- Lecellier, Charles-Henri; Wasserman, Wyeth W. & Mathelier, Anthony (2018). Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response. Genetics. ISSN 0016-6731. 209(4), s 1055- 1071 . doi: 10.1534/genetics.118.301116
- Sugiaman-Trapman, Debora; Vitezic, Morana; Jouhilahti, Eeva-Mari; Mathelier, Anthony; Lauter, Gilbert; Misra, Sougat; Daub, Carsten O.; Kere, Juha & Swoboda, Peter (2018). Characterization of the human RFX transcription factor family by regulatory and target gene analysis. BMC Genomics. ISSN 1471-2164. 19(181) . doi: 10.1186/s12864-018-4564-6 Full text in Research Archive.
- Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia; Lennartsson, Andreas; Drabløs, Finn Sverre; Ramilowski, Jordan; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R.R.; Kasukawa, Takeya & Kawaji, Hideya (2017). Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research. ISSN 0305-1048. 45(D1), s D737- D743 . doi: 10.1093/nar/gkw995 Full text in Research Archive.
- Cheneby, J; Gheorghe, Marius; Artufel, M; Mathelier, Anthony & Ballester, B (2017). ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. Nucleic Acids Research. ISSN 0305-1048. 46(D1), s D267- D275 . doi: 10.1093/nar/gkx1092 Full text in Research Archive.
- de rie, D; Abugesaissa, I; Alam, T; Arner, E; Ashoor, H; Åström, G; Babina, M; Bertin, N; Burroughs, AM; Carlisle, AJ; Daub, CO; Detmar, M; Daviatiiarov, R; Fort, A; Gebhard, C; Goldowitz, D; Guhl, S; Ha, TJ; Harschbager, J; Hasegawa, R; Hashimoto, K; Herlyn, M; Heutink, P; Hitchens, KJ; Hong, CC; Huang, E; Ishizu, Y; Kai, C; Kasukawa, T; Klinken, P; Lassmann, T; Lecellier, CH; Lee, W; Lizio, M; Makeev, V; Mathelier, Anthony; Medvededa, YA; Mejhert, N; Mungall, CJ; Noma, S; Ohshima, M; Okada-Hatakeyama, M; Persson, H; Rizzu, P; Roudnicky, F; Sætrom, Pål; Sato, H; Severin, J; Shin, JW; Swoboda, RK; Tarui, H; Toyoda, H; Vitting-Serup, K; Winterinham, L; Yamaguchi, Y; Yasuzawa, K; Yoneda, M; Yumoto, N; Zabierowsky, S; Zang, PG; Wells, CA; Summers, KM; Kawaii, H; Sandelin, A; Rehli, M; Hayashisaki, Y; Carninci, P; Forrest, ARR; de Hoon, MJL & De Hoon, Michiel J L (2017). An integrated expression atlas of miRNAs and their promoters in human and mouse. Nature Biotechnology. ISSN 1087-0156. 35(9), s 872- 878 . doi: 10.1038/nbt.3947
- Fleischer, Thomas; Tekpli, Xavier; Mathelier, Anthony; Wang, Shixiong; Nebdal, Daniel J.H.; Dhakal, Hari Prasad; Sahlberg, Kristine Kleivi; Schlichting, Ellen; Børresen-Dale, Anne-Lise; Borgen, Elin; Naume, Bjørn; Eskeland, Ragnhild; Frigessi, Arnoldo; Tost, Jörg; Rodriguez, Antoni Hurtado & Kristensen, Vessela N. (2017). DNA methylation at enhancers identifies distinct breast cancer lineages. Nature Communications. ISSN 2041-1723. 8(1379) . doi: 10.1038/s41467-017-00510-x Full text in Research Archive.
- Khan, Aziz; Fornes, O; Stigliani, A; Gheorghe, Marius; Castro Mondragón, Jaime Abraham; van der Lee, R; Bessy, A; Cheneby, J; Kulkarni, SR; Tan, G; Baranasic, D; Arenillas, DJ; Sandelin, A; Vandepoele, K; Lenhard, B; Ballester, B; Wassermann, WW; Parcy, F & Mathelier, Anthony (2017). JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research. ISSN 0305-1048. 46(1), s D260- D266 . doi: 10.1093/nar/gkx1126 Full text in Research Archive.
- Khan, Aziz & Mathelier, Anthony (2017). Intervene: a tool for intersection and visualization of multiple gene or genomic region sets. BMC Bioinformatics. ISSN 1471-2105. 18(287) . doi: 10.1186/s12859-017-1708-7 Full text in Research Archive.
- Khan, Aziz & Mathelier, Anthony (2017). JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics. ISSN 1367-4803. 34(9), s 1612- 1614 . doi: 10.1093/bioinformatics/btx804 Full text in Research Archive.
- Arenillas, David J.; Forrest, Alistair R.R.; Kawaji, Hideya; Lassmann, Timo; Wasserman, Wyeth W. & Mathelier, Anthony (2016). CAGEd-oPOSSUM: Motif enrichment analysis from CAGE-derived TSSs. Bioinformatics. ISSN 1367-4803. 32(18), s 2858- 2860 . doi: 10.1093/bioinformatics/btw337
- Mathelier, Anthony; Xin, Beibei; Chiu, Tsu-Pei; Yang, Lin; Rohs, REmo & Wasserman, Wyeth W. (2016). DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo. Cell Systems. ISSN 2405-4712. 3, s 278- 286 . doi: 10.1016/j.cels.2016.07.001
- Shi, Wenqiang; Fornes, Oriol; Mathelier, Anthony & Wasserman, Wyeth W. (2016). Evaluating the impact of single nucleotide variants on transcription factor binding. Nucleic Acids Research. ISSN 0305-1048. 44(21), s 10106- 10116 . doi: 10.1093/nar/gkw691
- Mathelier, Anthony; Zhao, Xiaobei; Zhang, Allen W.; Parcy, François; Worsley-Hunt, Rebecca; Arenillas, David J.; Buchman, Sorana; Chen, Chih-yu; Chou, Alice; Ienasescu, Hans; Lim, Jonathan; Shyr, Casper; Tan, Ge; Zhou, Michelle; Lenhard, Boris; Sandelin, Albin & Wasserman, Wyeth W. (2014). JASPAR 2014: An extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Research. ISSN 0305-1048. 42(1), s D142- D147 . doi: 10.1093/nar/gkt997 Full text in Research Archive.
- Khan, Aziz; Montenegro-Montero, Alejandro & Mathelier, Anthony (2018). Put science first and formatting later. EMBO Reports. ISSN 1469-221X. . doi: 10.15252/embr.201845731
Published Dec. 5, 2016 4:34 PM
- Last modified Mar. 28, 2017 1:07 PM