Anthony Mathelier

• Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony (2019). A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research.  ISSN 0305-1048.  47(4), s e21 . doi: 10.1093/nar/gky1210
• Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony; Thiede, Bernd; Walker, Suzanne & Mills, Ian Geoffrey (2019). High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics.  ISSN 1838-7640.  9(8), s 2183- 2197 . doi: 10.7150/thno.30834
• Fornes, Oriol; Gheorghe, Marius; Richmond, Phillip A.; Arenillas, David J.; Wasserman, Wyeth W. & Mathelier, Anthony (2018). MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations. Scientific Data.  ISSN 2052-4463.  5:180141, s 1- 7 . doi: 10.1038/sdata.2018.141
• Khan, Aziz; Mathelier, Anthony & Zhang, Xuegong (2018). Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers. Epigenetics.  ISSN 1559-2294.  13(9), s 910- 922 . doi: 10.1080/15592294.2018.1514231
• Lecellier, Charles-Henri; Wasserman, Wyeth W. & Mathelier, Anthony (2018). Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response. Genetics.  ISSN 0016-6731.  209(4), s 1055- 1071 . doi: 10.1534/genetics.118.301116
• Sugiaman-Trapman, Debora; Vitezic, Morana; Jouhilahti, Eeva-Mari; Mathelier, Anthony; Lauter, Gilbert; Misra, Sougat; Daub, Carsten O.; Kere, Juha & Swoboda, Peter (2018). Characterization of the human RFX transcription factor family by regulatory and target gene analysis. BMC Genomics.  ISSN 1471-2164.  19(181) . doi: 10.1186/s12864-018-4564-6
• Cheneby, J; Gheorghe, Marius; Artufel, M; Mathelier, Anthony & Ballester, B (2017). ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. Nucleic Acids Research.  ISSN 0305-1048.  46(D1), s D267- D275 . doi: 10.1093/nar/gkx1092 Full text in Research Archive.
• de rie, D; Abugesaissa, I; Alam, T; Arner, E; Ashoor, H; Åström, G; Babina, M; Bertin, N; Burroughs, AM; Carlisle, AJ; Daub, CO; Detmar, M; Daviatiiarov, R; Fort, A; Gebhard, C; Goldowitz, D; Guhl, S; Ha, TJ; Harschbager, J; Hasegawa, R; Hashimoto, K; Herlyn, M; Heutink, P; Hitchens, KJ; Hong, CC; Huang, E; Ishizu, Y; Kai, C; Kasukawa, T; Klinken, P; Lassmann, T; Lecellier, CH; Lee, W; Lizio, M; Makeev, V; Mathelier, Anthony; Medvededa, YA; Mejhert, N; Mungall, CJ; Noma, S; Ohshima, M; Okada-Hatakeyama, M; Persson, H; Rizzu, P; Roudnicky, F; Sætrom, Pål; Sato, H; Severin, J; Shin, JW; Swoboda, RK; Tarui, H; Toyoda, H; Vitting-Serup, K; Winterinham, L; Yamaguchi, Y; Yasuzawa, K; Yoneda, M; Yumoto, N; Zabierowsky, S; Zang, PG; Wells, CA; Summers, KM; Kawaii, H; Sandelin, A; Rehli, M; Hayashisaki, Y; Carninci, P; Forrest, ARR; de Hoon, MJL & De Hoon, Michiel J L (2017). An integrated expression atlas of miRNAs and their promoters in human and mouse. Nature Biotechnology.  ISSN 1087-0156.  35(9), s 872- 878 . doi: 10.1038/nbt.3947
• Fleischer, Thomas; Tekpli, Xavier; Mathelier, Anthony; Wang, Shixiong; Nebdal, Daniel J.H.; Dhakal, Hari Prasad; Sahlberg, Kristine Kleivi; Schlichting, Ellen; Børresen-Dale, Anne-Lise; Borgen, Elin; Naume, Bjørn; Eskeland, Ragnhild; Frigessi, Arnoldo; Tost, Jörg; Rodriguez, Antoni Hurtado & Kristensen, Vessela N. (2017). DNA methylation at enhancers identifies distinct breast cancer lineages. Nature Communications.  ISSN 2041-1723.  8(1379) . doi: 10.1038/s41467-017-00510-x Full text in Research Archive.
• Khan, Aziz; Fornes, O; Stigliani, A; Gheorghe, Marius; Castro Mondragón, Jaime Abraham; van der Lee, R; Bessy, A; Cheneby, J; Kulkarni, SR; Tan, G; Baranasic, D; Arenillas, DJ; Sandelin, A; Vandepoele, K; Lenhard, B; Ballester, B; Wassermann, WW; Parcy, F & Mathelier, Anthony (2017). JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research.  ISSN 0305-1048.  46(1), s D260- D266 . doi: 10.1093/nar/gkx1126 Full text in Research Archive.
• Khan, Aziz & Mathelier, Anthony (2017). JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics.  ISSN 1367-4803.  34(9), s 1612- 1614 . doi: 10.1093/bioinformatics/btx804 Full text in Research Archive.
• Mathelier, Anthony; Xin, Beibei; Chiu, Tsu-Pei; Yang, Lin; Rohs, REmo & Wasserman, Wyeth W. (2016). DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo. Cell Systems.  ISSN 2405-4712.  3, s 278- 286 . doi: 10.1016/j.cels.2016.07.001
• Shi, Wenqiang; Fornes, Oriol; Mathelier, Anthony & Wasserman, Wyeth W. (2016). Evaluating the impact of single nucleotide variants on transcription factor binding. Nucleic Acids Research.  ISSN 0305-1048.  44(21), s 10106- 10116 . doi: 10.1093/nar/gkw691

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• Khan, Aziz; Montenegro-Montero, Alejandro & Mathelier, Anthony (2018). Put science first and formatting later. EMBO Reports.  ISSN 1469-221X. . doi: 10.15252/embr.201845731

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