Recent selected publications

  • Paulsen J, Sekelja M, Oldenburg AR, Barateau A, Briand N, Delbarre E, Shah, A, Sørensen AL, Vigouroux C, Buendia B, Collas P. 2017. Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts. Genome Biol. 18, 21-29.
  • Guénantin AC, Briand N, Capel E, Dumont F, Morichon R, Provost C, Stillitano F, Jeziorowska D, Siffroi JP, Hajjar RJ, Fève B, Hulot JS, Collas P, Capeau J, Vigouroux C. 2017. Functional human beige adipocytes from induced pluripotent stem cells. Diabetes doi: 10.2337/db16-1107.
  • Delbarre E, Ivanauskiene K, Spirkoski J, Shah A, Vekterud K, Moskaug JØ, Bøe SO, Wong L, Küntziger T, Collas P. 2017. PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX. Genome Res. doi: 10.1101/gr.215830.116.
  • Sekelja M., Paulsen J., Collas P. 2016. 4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation? Genome Biol 17, 54
  • Rønningen T, Shah A, Oldenburg AR, Vekterud K, Delbarre E, Moskaug JØ, Collas P. 2015. Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B. Genome Res 25, 1825-1835.
  • Paulsen J, Gramstad O, Collas P. 2015. Manifold-based optimization for single-cell 3D genome reconstruction. PLoS Comput Biol 11, e1004396.
  • Lund EG, Duband-Goulet I, Oldenburg A, Buendia B, Collas P. 2015. Distinct features of lamin A-interacting chromatin domains mapped by ChIP-sequencing from sonicated or micrococcal nuclease-digested chromatin. Nucleus 6, 30-39.
  • Oldenburg AR, Delbarre E, Thiede B, Vigouroux C, Collas P. 2014. Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Hum. Mol. Gen. 23, 1151-1162.
  • Lund EG, Oldenburg AR, Collas P. 2014. Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations. Nucl. Acids Res. 42, e92.
  • Ivanauskiené K, Delbarre E, McGhie JD, Küntziger T, Wong LH, Collas P. 2014. The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity. Genome Res. 24, 1584-1594.
  • Shah A, Oldenburg AR, Collas P. 2014. A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules. BMC Genomics 15, 1186.
  • Delbarre E, Ivanauskiene K, Küntziger T, Collas P. 2013. DAXX-dependent supply of soluble (H3.3-H4) dimers into PML bodies pending deposition into chromatin. Genome Res. 23, 440-451.
  • Lund E, Oldenburg AR, Delbarre E, Freberg CT, Duband-Goulet I, Eskeland R, Buendia B, Collas P. 2013. Lamin A/C-promoter interactions specify chromatin state-dependent transcription outcomes. Genome Res. 23, 1580-1589.
  • Lindeman LC, Andersen IS, Reiner AH, Aanes H, Winata CL, Li N, Mathavan S, Müller F, Aleström P, Collas P. 2011. Pre-patterning of developmental gene expression by modified histones before zygotic gene activation. Dev. Cell, 21, 993-1004
Published Mar. 9, 2011 4:26 PM - Last modified Apr. 7, 2017 3:31 PM