Current Position
- October 2018 - present: Group Leader, Computational Biology and Systems Medicine Group, Centre for Molecular Medicine Norway, University of Oslo
Academic Interests
- Gene regulatory networks
- Cancer genomics
- Data integration
- Computational Biology
- Method development
- Systems Medicine
- Bioinformatics
- Sarcomas
Background
Research:
- Dana-Farber Cancer Insitute, Boston, MA, USA
- Harvard Chan School of Public Health, Boston, MA, USA
- 07/2013-08/2018: Postdoctoral Fellow
- 05/2013-07/2013: Visiting Scientist
Education:
- 12/2008-06/2013: Doctor of Philosophy (PhD), Leiden University Medical Center, Leiden, the Netherlands
- 09/2006-12/2008: Master of Science (MSc) in Biomedical Sciences, Leiden University Medical Center, Leiden, the Netherlands
- 09/2003-07/2007: Bachelor of Science (BSc) in Biomedical Sciences, Leiden University Medical Center, Leiden, the Netherlands
Awards and Grants:
- 2016-2018: Charles A. King Postdoctoral Fellowship, Sara Elizabeth O’Brien and Bank of America, co-Trustees
- 2016-2017: National Cancer Institute Brain Cancer Specialized Program of Research Excellence Career Enhancement Program Award
Tags:
Cancer Genomics,
Systems medicine,
Bioinformatics,
Computational Biology,
Genomics,
Sarcomas,
Cancer,
Statistikk sannsynlighetsregning og forsikring
Publications
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Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Kanduri, Chakravarthi; Kompova, Radmila & Vazov, Nikolay Aleksandrov
[Show all 41 contributors for this article]
(2021).
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires.
Nature Machine Intelligence.
3(11),
p. 936–944.
doi:
10.1038/s42256-021-00413-z.
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Andreeva, Olga; Li, Wei; Ding, Wei; Kuijjer, Marieke Lydia; Quackenbush, John & Chen, Ping
(2020).
Catalysis Clustering with GAN by Incorporating Domain
Knowledge.
In Gupta, Rajesh & Liu, Yan (Ed.),
KDD '20: Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining.
Association for Computing Machinery (ACM).
ISSN 978-1-4503-7998-4.
p. 1344–1352.
doi:
https:/doi.org/10.1145/3394486.3403187.
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Kuijjer, Marieke Lydia
(2020).
Predicting Cancer Evolution Using Cell State Dynamics.
Cancer Research.
ISSN 0008-5472.
80(15).
doi:
10.1158/0008-5472.CAN-20-1878.
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Barnett, Ian; Nishant, Malik; Kuijjer, Marieke Lydia; Mucha, Peter & Onnela, Jukka-Pekka
(2019).
Feature-based classification of networks.
Network Science.
ISSN 2050-1242.
7(3),
p. 438–444.
doi:
10.1017/nws.2019.21.
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van IJzendoorn, David G.P.; Szuhai, Karoly; Briaire-De Bruijn, Inge H; Kostine, Marie; Kuijjer, Marieke Lydia & Bovée, Judith V.M.G.
(2019).
Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas.
PLoS Computational Biology.
ISSN 1553-734X.
15(2),
p. 1–19.
doi:
10.1371/journal.pcbi.1006826.
Full text in Research Archive
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Fagny, Maud; Paulson, Joseph N.; Kuijjer, Marieke; Sonawane, Abhijeet; Chen, Cho-Yi & Lopes-ramos, Camila
[Show all 9 contributors for this article]
(2017).
Exploring regulation in tissues with eQTL networks.
Proceedings of the National Academy of Sciences of the United States of America.
ISSN 0027-8424.
doi:
10.1073/pnas.1707375114.
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van IJzendoorn, David G.P.; Glass, Kimberly; Quackenbush, John & Kuijjer, Marieke
(2016).
PyPanda: a Python package for gene regulatory network reconstruction.
Bioinformatics.
ISSN 1367-4803.
doi:
10.1093/bioinformatics/btw422.
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Baranski, Zuzanna; Booij, Tijmen H.; Kuijjer, Marieke; de Jong, Yvonne; Cleton-Jansen, Anne-Marie & Price, Leo S.
[Show all 10 contributors for this article]
(2015).
MEK inhibition induces apoptosis in osteosarcoma cells with constitutive ERK1/2 phosphorylation.
Genes & cancer.
ISSN 1947-6019.
6.
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Pahl, Jens H.W.; Kwappenberg, Kitty M.C.; Varypataki, Eleni M.; Santos, Susy J.; Kuijjer, Marieke & Mohamed, Susan
[Show all 13 contributors for this article]
(2014).
Macrophages inhibit human osteosarcoma cell growth after activation with the bacterial cell wall derivative liposomal muramyl tripeptide in combination with interferon-γ.
Journal of Experimental and Clinical Cancer Research.
ISSN 0392-9078.
doi:
10.1186/1756-9966-33-27.
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Kuijjer, Marieke; Hogendoorn, Pancras C.W. & Cleton-Jansen, Anne-Marie
(2013).
Genome-wide analyses on high-grade osteosarcoma: making sense of a genomically most unstable tumor.
International Journal of Cancer.
ISSN 0020-7136.
doi:
10.1002/ijc.28124.
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de Vos van Steenwijk, Peggy J.; Ramwadhdoebe, T.H.; Goedemans, R.; Doorduijn, E.M.; van Ham, J.J. & Gorter, A.
[Show all 11 contributors for this article]
(2013).
Tumor-infiltrating CD14-positive myeloid cells and CD8-
positive T-cells prolong survival in patients with cervical
carcinoma.
International Journal of Cancer.
ISSN 0020-7136.
doi:
10.1002/ijc.28309.
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Pansuriya, Twinkal C.; van Eijk, Ronald; D'Adamo, Pio; van Ruler, Maayke A.J.H.; Kuijjer, Marieke & Oosting, Jan
[Show all 27 contributors for this article]
(2011).
Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell hemangioma in Ollier disease and Maffucci syndrome.
Nature Genetics.
ISSN 1061-4036.
doi:
10.1038/ng.1004.
View all works in Cristin
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Sajib, Saikat Das; Florholmen-Kjær, Åse; Brun, Vegard; Mortensen, Elin Synnøve; Hovd, Aud-Malin Karlsson & Tekpli, Xavier
[Show all 10 contributors for this article]
(2023).
Epithelial-to-mesenchymal transition (EMT) is a major contributor to intratumor heterogeneity in lymph node metastasis in breast cancer.
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Kuijjer, Marieke
(2022).
Gene regulatory networks in precision medicine.
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Kuijjer, Marieke
(2022).
A network approach to personalized medicine.
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Kuijjer, Marieke
(2022).
Modeling genome-wide regulatory network rewiring in healthy tissues and cancer.
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Kuijjer, Marieke
(2022).
Modeling regulatory network rewiring in cancer.
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Ben Guebila, Marouen; Weighill, Deborah; Lopes-Ramos, Camila M.; Burkholz, Rebekka; Pop, Romana-Tabita & Palepu, Kalyan
[Show all 14 contributors for this article]
(2022).
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks.
Nature Methods.
ISSN 1548-7091.
19,
p. 511–513.
doi:
10.1038/s41592-022-01479-2.
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Kuijjer, Marieke
(2021).
Modeling gene regulatory network rewiring in healthy tissues and cancer.
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Kuijjer, Marieke Lydia; Paulson, Joseph N. & Quackenbush, John
(2020).
Expression analysis.
In Baxevanis, Andreas D.; Bader, Gary D. & Wishart, David S. (Ed.),
Bioinformatics.
John Wiley & Sons.
ISSN 978-1-119-33558-0.
p. 279–314.
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Lopes-ramos, Camila; Kuijjer, Marieke Lydia; Ogino, Shuji; Fuchs, Charles S.; DeMeo, Dawn L. & Glass, Kimberly
[Show all 7 contributors for this article]
(2019).
Correction: Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism.
Cancer Research.
ISSN 0008-5472.
View all works in Cristin
Published
Oct. 11, 2018 11:50 AM
- Last modified
Jan. 7, 2021 8:34 PM