Jan G. Bjaalie
Professor

Norwegian version of this page
Phone
+47-22851263
Mobile phone
+47-91787901
Room
L-165
Username
Visiting address
Domus Medica
Gaustad
Sognsvannsveien 9
0372 Oslo
Postal address
Department of Molecular Medicine
P.O. Box 1105 Blindern
N-0317 Oslo
Academic interests
- Neuroinformatics: from ontologies to cyberinfrastructure for data management and sharing
- Brain architecture: next generation digital brain atlasing
- Wiring patterns of the brain / brain connectivity
- Map transformations in sensory systems of the brain
Background
Education
- 1990: Ph.D., University of Oslo (neuroanatomy)
- 1986: M.D., University of Oslo
Positions held
- 2017 - : EU Human Brain Project: Leader of the Neuroinformatics Platform (2017 - 2020), Infrastructure Director (Nov 2018 -), Leader of EBRAINS Data services (2020 - ).
- 2009 - : Head of the Norwegian Neuroinformatics Node
- 2009 - 2016: Head of Institute, Institute of Basic Medical Sciences, University of Oslo
- 2009 - 2011: Senior advisor, International Neuroinformatics Coordinating Facility, Karolinska institutet, Stockholm, www.incf.org
- 2006 - 2008: Executive Director, International Neuroinformatics Coordinating Facility, Karolinska institutet, Stockholm
- 2002 - 2012: Group leader of neuroinformatics, Centre for Molecular Biology and Neuroscience, Norwegian Center of Excellence, University of Oslo
- 1999: Visiting professor, University of Antwerp and Born Bounge Foundation, Antwerp
- 1997 - present: Professor, Neural Systems and Graphics Computing Laboratory, Department of Anatomy, University of Oslo
- 1992 - 1997: Associate Professor, Neural Systems and Graphics Computing Laboratory, Department of Anatomy, University of Oslo
- 1986 - 1991: Assistant Professor, Anatomical Institute, University of Oslo
Other professional activities
- Founding Chief Editor: Frontiers in Neuroinformatics, www.frontiersin.org/neuroinformatics
- Section Editor: Brain Structure and Function, Springer Verlag
- Co-chair, International Brain Initiative, www.internationalbraininitiative.org (2019 -)
- Member of Advisory Board for the International Initiative for Traumatic Brain Injury Research (InTBIR), appointed by European Commission, DG Research & Innovation (2018 -)
- Chair of the program committee for Neuroinformatics 2012 (INCF Congress), www.neuroinformatics2012.org
- Member of the program committee for Neuroinformatics 2011 (INCF Congress), www.neuroinformatics2011.org
- Chair of the Governing Board of the International Neuroinformatics Coordinating Facility (2013 - 2016)
- Norwegian representative to the Governing Board of the International Neuroinformatics Coordinating Facility (2011 - 2016)
- Member of The Society for Neuroscience Committee on Neuroinformatics (2004 - 2009)
- Member of expert panel Neuroanatomy Ontology, National Institute of Health (2000-2001)
- Norwegian delegate to OECD MegaScience Forum/Global Science Forum, Neuroinformatics working groups (1997 – 2002)
Collaboration
- Leader of the Neuroinformatics Platform (2017 - 2020) and Infrastructure Director (Nov 2018 -) of the EU Human Brain Project
- Partner in UiO - Faculty of Medicine SERTA (Scientific Excellence Research Thematic Area): Healthy Brain Ageing (2013 - 2019)
- Head of the Norwegian Node of the International Neuroinformatics Coordinating Facility (2009 - present)
- Project coordinator: High Performance Computing for Neuroinformatics, NOTUR (2001 – 2004)
- Project coordinator, EU-US Task Force and EC Special Support Action workshops: “Databasing the brain” (2001, 2006)
- Partner in Norwegian Centre of Excellence (Centre for Molecular Biology and Neuroscience) 2002 - 2012
- Partner in EU projects (Information transfer and computation in the cerebellum, Biotech, 1998-2001; Neuroinformatics and computational neuroscience in Europe, Thematic network,2000 – 2003; Computation and plasticity in the cerebellar system, Quality of Life, 2002-2004; Human Brain Project, 2013 - )
Publications
- Aarestrup, FM; Albeyatti, A; Armitage, W; Auffray, C; Augello, L; Balling, Rudi; Benhabiles, N; Bertolini, Guido; Bjaalie, Jan G.; Black, Merja; Blomberg, N.; Bogaert, P; Bubak, M; Claerhout, B; Clarke, Leon; De Meulder, B; D'Errico, G; Di Meglio, A; Forgo, N; Gans-Combe, C; Gray, AE; Gut, I; Gyllenberg, Alexandra; Hemmrich-Stanisak, G; Hjorth, L; Ioannidis, Yannis; Jarmalaite, S; Kel, A; Kherif, F; Korbel, Jan O.; Larue, C; Laszlo, Marton; Maas, Andrew; Magalhaes, Livia; Manneh-Vangramberen, I; Morley-Fletcher, E; Ohmann, Christian; Oksvold, P; Oxtoby, NP; Perseil, Isabelle; Pezoulas, V; Riess, O; Riper, Heleen; Roca, J; Rosenstiel, P; Sabatier, Pierre; Sanz, F.; Tayeb, M; Thomassen, Gard O Sundby; Van Bussel, J; Van den Bulcke, Marc & Van Oyen, Herman (2020). Towards a European health research and innovation cloud (HRIC).. Genome Medicine. ISSN 1756-994X. 12(18) . doi: 10.1186/s13073-020-0713-z Full text in Research Archive. Show summary
- Adams, Amy; Albin, Stephanie; Amunts, Katrin; Asakawa, Tasia; Bernard, Amy; Bjaalie, Jan G.; Chakli, Khaled; Deshler, James; De Koninck, Yves; Ebell, Christoph; Egan, Gary; Hale, Melina E; Häusser, Michael; Jeong, Sung-Jin; lles, Judy; Lanyon, Linda; Li, Pingping; Li, Yan; Magistretti, Pierre; McMahon, Agnes; Montojo, Caroline; Ohtsuka, Toshihisa; Okabe, Shigeo; Okano, Hideyuki; Pei, Gang; Pouget, Alexandre; Reindorp, Jason; Richards, Linda J.; Rommelfanger, Karen S.; Sajda, Paul; Scobie, Kimberly N.; Suh, Pann-Ghill; Tanaka, Keiji; Thiels, Edda; Valdes-Sosa, Pedro; Welchman, Andrew E.; White, Samantha; Wilson, Gary; Yuste, Rafael; Zhang, Xu & Zheng, Jialin (2020). International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts.. Neuron. ISSN 0896-6273. 105(2), s 212- 216 . doi: https://doi.org/10.1016/j.neuron.2020.01.002 Show summary
- Bjerke, Ingvild Elise; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2020). Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data. ISSN 2052-4463. 7 . doi: 10.6084/m9.figshare.12199088
- Bjerke, Ingvild Elise; Yates, Sharon Christine; Laja, Arthur; Witter, Menno; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2020). Densities and numbers of calbindin andparvalbumin positive neurons across the rat and mouse brain. iScience. ISSN 2589-0042. . doi: http://dx.doi.org/10.1016/j.isci.2020.101906 Full text in Research Archive. Show summary
- Groeneboom, Nicolaas Ervik; Yates, Sharon Christine; Puchades, Maja & Bjaalie, Jan G. (2020). Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images.. Frontiers in Neuroinformatics. ISSN 1662-5196. . doi: 10.3389/fninf.2020.00037
- Amunts, Katrin; Knoll, Alois C; Lippert, Thomas; Pennartz, Cyriel M.A.; Ryvlin, Philippe; Destexhe, Alain; Jirsa, Viktor K; D'Angelo, Egidio & Bjaalie, Jan G. (2019). The Human Brain Project?Synergy between neuroscience, computing, informatics, and brain-inspired technologies. PLoS Biology. ISSN 1544-9173. 17(7) . doi: 10.1371/journal.pbio.3000344 Full text in Research Archive.
- Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja; Checinska, Martyna; Kleven, Heidi; Jankowsky, Joanna L.; Bjaalie, Jan G. & Leergaard, Trygve B. (2019). Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data. ISSN 2052-4463. 6, s 1- 15 . doi: 10.1038/sdata.2019.28
- Puchades, Maja; Csúcs, Gergely; Ledergerber, Debora; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLOS ONE. ISSN 1932-6203. 14(5) . doi: 10.1371/journal.pone.0216796 Full text in Research Archive.
- Yates, Sharon Christine; Groeneboom, Nicolaas Ervik; Coello, Christopher; Lichtenthaler, Stefan F.; Kuhn, Peer-Hendrik; Demuth, Hans-Ulrich; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve B.; Kreshuk, Anna; Puchades, Maja & Bjaalie, Jan G. (2019). QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers in Neuroinformatics. ISSN 1662-5196. 13 . doi: 10.3389/fninf.2019.00075 Full text in Research Archive. Show summary
- Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L; Fiorilli, J; Pennartz, CMA; Pavone, FS; Puchades, Maja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2018). Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry. ISSN 0924-9338. 50, s 70- 76 . doi: 10.1016/j.eurpsy.2018.02.0 Full text in Research Archive.
- Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2018). Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy. ISSN 1662-5129. 12 . doi: 10.3389/fnana.2018.00082 Full text in Research Archive.
- Heiland, Tina; Zeitschel, Ulrike; Puchades, Maja; Kuhn, Peer-Hendrik; Lichtenthaler, Stefan F.; Bjaalie, Jan G.; Hartlage-Rübsamen, Maike; Roßner, Steffen & Höfling, Corinna (2018). Defined astrocytic expression of human amyloid precursor protein in Tg2576 mouse brain. Glia. ISSN 0894-1491. 67(2), s 393- 403 . doi: 10.1002/glia.23550 Full text in Research Archive.
- Plank, Anne-Christine; Canneva, Fabio; Raber, Kerstin; Urbach, Yvonne K; Dobner, Julia; Puchades, Maja; Bjaalie, Jan G.; Gillmann, Clarissa; Bäuerle, Tobias; Riess, Olaf; Nguyen, Hoa H.P. & von Hörsten, Stephan (2018). Early Alterations in Operant Performance and Prominent Huntingtin Aggregation in a Congenic F344 Rat Line of the Classical CAGn51trunc Model of Huntington Disease.. Frontiers in Neuroscience. ISSN 1662-4548. 12 . doi: 10.3389/fnins.2018.00011 Full text in Research Archive.
- Dempsey, Bowen; Le, Sheng; Turner, Anita; Bokiniec, Phil; Ramadas, Radhika; Bjaalie, Jan G.; Menuet, Clement; Neve, Rachael; Allen, Andrew M; Goodchild, Ann K & McMullan, Simon (2017). Mapping and analysis of the connectome of sympathetic premotor neurons in the rostral ventrolateral medulla of the rat using a volumetric brain atlas. Frontiers in Neural Circuits. ISSN 1662-5110. 11 . doi: 10.3389/fncir.2017.00009
- Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csúcs, Gergely & Bjaalie, Jan G. (2016). Brain-wide mapping of axonal connections: Workflow for automated detection and spatial analysis of labeling in microscopic sections. Frontiers in Neuroinformatics. ISSN 1662-5196. 10(11) . doi: 10.3389/fninf.2016.00011 Full text in Research Archive.
- Schubert, N; Axer, M; Schober, M; Huynh, A; Huysegoms, M; Palomero-Gallagher, N; Bjaalie, Jan G.; Leergaard, Trygve Brauns; Kirlangic, Mehmet E.; Amunts, K & Zilles, Karl (2016). 3D reconstructed cyto-, muscarinic M<sub>2</sub> receptor, and fiber architecture of the rat brain registered to the waxholm space atlas. Frontiers in Neuroanatomy. ISSN 1662-5129. 10(MAY) . doi: 10.3389/fnana.2016.00051
- Yetman, Michael J.; Lillehaug, Sveinung; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Jankowsky, Joanna L. (2016). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function. ISSN 1863-2653. 221(4), s 2231- 2249 . doi: 10.1007/s00429-015-1040-9
- Boccara, Charlotte Nina; Kjønigsen, Lisa Jannicke; Hammer, Ingvild Marie F.; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Witter, Menno (2015). A three-plane architectonic atlas of the rat hippocampal region. Hippocampus. ISSN 1050-9631. 25(7), s 838- 857 . doi: 10.1002/hipo.22407
- Kjønigsen, Lisa Jannicke; Lillehaug, Sveinung; Bjaalie, Jan G.; Witter, Menno & Leergaard, Trygve Brauns (2015). Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging. NeuroImage. ISSN 1053-8119. 108, s 441- 449 . doi: 10.1016/j.neuroimage.2014.12.080 Full text in Research Archive.
- Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2015). Addendum to “Waxholm Space atlas of the Sprague Dawley rat brain” [NeuroImage 97 (2014) 374-386]. NeuroImage. ISSN 1053-8119. 105, s 561- 562 . doi: 10.1016/j.neuroimage.2014.10.017
- Sergejeva, Marina; Papp, Eszter Agnes; Bakker, Rembrandt; Gaudnek, Manuel A.; Okamura-Oho, Yuko; Boline, Jyl; Bjaalie, Jan G. & Hess, Andreas (2015). Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates. Journal of Neuroscience Methods. ISSN 0165-0270. 240, s 161- 169 . doi: 10.1016/j.jneumeth.2014.11.005
- Tiesinga, Paul; Bakker, Rembrandt; Hill, Sean & Bjaalie, Jan G. (2015). Feeding the human brain model. Current Opinion in Neurobiology. ISSN 0959-4388. 32, s 107- 114 . doi: 10.1016/j.conb.2015.02.003
- Zakiewicz, Izabela Maria; Majka, Piotr; Wòjcik, Daniel K.; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2015). Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex. PLOS ONE. ISSN 1932-6203. 10(9) . doi: 10.1371/journal.pone.0137571
- Lillehaug, Sveinung; Syverstad, Gry-Helen Enger; Nilsson, Lars; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Torp, Reidun (2014). Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice. Neurobiology of Aging. ISSN 0197-4580. 35(3), s 556- 564 . doi: 10.1016/j.neurobiolaging.2013.09.013
- Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2014). Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage. ISSN 1053-8119. 97, s 374- 386 . doi: 10.1016/j.neuroimage.2014.04.001
- Zakiewicz, Izabela Maria; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2014). Brain-wide map of efferent projections from rat barrel cortex. Frontiers in Neuroinformatics. ISSN 1662-5196. 8 . doi: 10.3389/fninf.2014.00005
- Hines, Kim Eigard; Bolle, Erlend; Rissi, Michael; Volgyes, David; Dorholt, Ole; Røhne, Ole Myren; Stapnes, Steinar; Bjaalie, Jan G. & Skretting, Arne (2013). COMPET: High resolution high sensitivity MRI compatible pre-clinical PET scanner. Nuclear Instruments and Methods in Physics Research Section A : Accelerators, Spectrometers, Detectors and Associated Equipment. ISSN 0168-9002. 732, s 581- 585 . doi: 10.1016/j.nima.2013.05.148
- Nagelhus, Erlend Arnulf; Amiry-Moghaddam, Mahmood; Bergersen, Linda Hildegard; Bjaalie, Jan G.; Eriksson, Jens; Gundersen, Vidar; Leergaard, Trygve Brauns; Morth, Jens Preben; Storm-Mathisen, Jon; Torp, Reidun; Walhovd, Kristine B & Tønjum, Tone (2013). The glia doctrine: Addressing the role of glial cells in healthy brain ageing. Mechanisms of Ageing and Development. ISSN 0047-6374. 134(10), s 449- 459 . doi: 10.1016/j.mad.2013.10.001
- Stensrud, Mats Julius; Chaudhry, Farrukh Abbas; Leergaard, Trygve Brauns; Bjaalie, Jan G. & Gundersen, Vidar (2013). Vesicular glutamate transporter-3 in the rodent brain: Vesicular colocalization with vesicular -aminobutyric acid transporter. Journal of Comparative Neurology. ISSN 0021-9967. 521(13), s 3042- 3056 . doi: 10.1002/cne.23331
- White, NS; Leergaard, Trygve Brauns; D'Arceuil, Helen; Bjaalie, Jan G. & Dale, AM (2013). Probing tissue microstructure with Restriction Spectrum Imaging: Histological and theoretical validation. Human Brain Mapping. ISSN 1065-9471. 34(2), s 327- 346 . doi: 10.1002/hbm.21454
- Rissi, Michael; Bolle, Erlend; Volgyes, David; Bjaalie, Jan G.; Dorholt, Ole; Hines, Kim Eigard; Røhne, Ole Myren; Skretting, Arne & Stapnes, Steinar (2012). Characterization of a high resolution and high sensitivity pre-clinical PET scanner with 3D event reconstruction. Nuclear Instruments and Methods in Physics Research Section A : Accelerators, Spectrometers, Detectors and Associated Equipment. ISSN 0168-9002. 695, s 135- 138 . doi: 10.1016/j.nima.2011.10.042
- Kjønigsen, Lisa Jannicke; Leergaard, Trygve Brauns; Witter, Menno & Bjaalie, Jan G. (2011). Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region. Frontiers in Neuroinformatics. ISSN 1662-5196. 8(5) . doi: 10.3389/fninf.2011.00002 Full text in Research Archive.
- Sand, Olav; Sjaastad, Øystein; Haug, Egil & Bjaalie, Jan G. (2019). Anatomi og fysiologi - Menneskekroppen, 4. utgave. Gads forlag. ISBN 9788712058328. 666 s.
- Sand, Olav; Sjaastad, Øystein; Haug, Egil & Bjaalie, Jan G. (2018). Menneskekroppen - Fysiologi og anatomi, 3. utgave. Gyldendal Akademisk. ISBN 978-82-05-50482-0. 666 s.
- Sjaastad, Øystein; Toverud, Kari C.; Sand, Olav; Bjaalie, Jan G. & Egil, Haug (2018). Arbeidsbok til Menneskekroppen - Fysiologi og anatomi, 3. utgave. Gyldendal Akademisk. ISBN 978-82-05-51403-4. 224 s.
- Sand, Olav; Sjaastad, Øystein; Haug, Egil & Bjaalie, Jan G. (2015). Menneskets anatomi og fysiologi 3. utgave. Gads Forlag. ISBN 978-87-12-05107-7. 538 s.
- Sjaastad, Øystein; Toverud, Kari C.; Sand, Olav; Bjaalie, Jan G. & Egil, Haug (2015). Studieoppgaver til Menneskets anatomi og fysiologi. Gads forlag. ISBN 9788712050353. 203 s.
- Bjaalie, Jan G. (2020). EBRAINS: New enabling infrastructure for brain research (FENS 2020 Virtual Forum: Open Theatre talk).
- Bjaalie, Jan G. (2020). HBP / EBRAINS Overview at Human Brain Project 2020 Summit.
- Bjaalie, Jan G. (2020). International Brain Initiative: Facilitating Global Neuroscience Engagement.
- Bjaalie, Jan G. (2020). Sharing and publishing human brain data through the EBRAINS research infrastructure (GDPR impact conference). Show summary
- Einevoll, Gaute; Bjaalie, Jan G. & Plesser, Hans Ekkehard (2020, 12. oktober). Om hjerneforskning og Human Brain Project. [Internett]. Podcast: Vett og vitenskap med Gaute Einevoll.
- Gurdon, Brianna; Hadad, Niran; Telpoukhovskaia, Maria; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G. & Kaczorowski, Catherine (2020). Brain-wide spatial analysis to identify region-specific changes in cell composition associated with resilience to Alzheimer’s disease in the AD-BXD mouse population..
- Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dicksheid, Timo; Leergaard, Trygve B. & Bjaalie, Jan G. (2020). Neuroscience community-gains from data sharing through the EBRAINS infrastructure.
- Reiten, Ingrid; Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Kleven, Heidi; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Leergaard, Trygve B. & Bjaalie, Jan G. (2020). Data sharing through the online EBRAINS platform: a new service for brain research. Show summary
- Schlegel, Ulrike; Reiten, Ingrid; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dickscheid, Timo; Leergaard, Trygve B. & Bjaalie, Jan G. (2020). EBRAINS data sharing: benefits and workflow.
- Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Schlegel, Ulrike; Oliver, Schmid; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). EBRAINS fair data service: A novel infrastructure for making neuroscience data findable, accessible, interoperable, and reuseable.
- Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable.
- Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan; Hilverling, Anna; Kleven, Heidi; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure.
- Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2019). Find and explore rodent brain data using 3D atlases in the new EBRAINS infrastructure.
- Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2019). Infrastructure and workflow for integrating and navigating multi-scale and multi-modal murine neuroscience data using 3D digital brain reference atlases.
- Puchades, Maja; Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Workflow for quantification and spatial analysis of labeling in large series of histological images from murine brains. Show summary
- Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Groeneboom, Nicolaas Ervik; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2019). Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases. Show summary
- Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Puchades, Maja & Bjaalie, Jan G. (2019). Batch quantification and spatial analysis of labelling in microscopic rodent brain sections.
- Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Markovic, Milica; Kleven, Heidi; Zafarnia, Sara; Köhnen, Stefan; Legouée, Elodie; Puchades, Maja; Schmid, Oliver; Davison, Andrew P.; Muller, Jeff; Dicksheid, Timo; Leergaard, Trygve B. & Bjaalie, Jan G. (2018). HBP Curation service: Share your data via the Neuroinformatics platform.
- Bjaalie, Jan G. (2018). Data sharing in neuroscience: traditions, standards, and transformations.
- Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Bjaalie, Jan G. & Leergaard, Trygve B. (2018). Best practices for determining and documenting neuroanatomical locations in the rodent brain.
- Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Puchades, Maja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2018). Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure.
- Papp, Eszter Agnes; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Volumetric atlasing in the rodent brain: connecting experimental image data to standard anatomical space. Full text in Research Archive. Show summary
- von Linstow, Christian Ulrich; Yates, Sharon Christine; Leergaard, Trygve B.; Plank, A-C; von Hörsten, S.; Puchades, Maja & Bjaalie, Jan G. (2018). Whole brain analysis of Huntingtin aggregates in the F344 transgenic rat model of Huntington’s disease.
- Yates, Sharon Christine; Puchades, Maja; kreshuk, anna; Kutra, Dominik; Leergaard, Trygve B.; Bjaalie, Jan G. & Groeneboom, Nicolaas (2018). HBP Analytic Workflow: from Microscopic Image Data to Extracted Features in Atlas Space.
- Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G. & Dicksheid, Timo (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
- Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G. & Dicksheid, Timo (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
- Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Mapping topographical organization in mouse brain subcortical axonal projections using Human Brain Project infrastructure.
- Imad, Jala; Kleven, Heidi; Clascá, Francisco; Wennberg, Arvind Eirik; Osen, Kirsten Kjelsberg; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Witter, Menno; Bjaalie, Jan G. & Leergaard, Trygve B. (2017). Enriching and adding detail to the Waxholm Space rat brain reference atlas.
- Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen; Kleven, Heidi; Puchades, Maja; Suzen, M; Denker, Michael; Davison, A.; Grün, Sonja; Leprince, Y; Dickscheid, Timo; McMurtrie, C; Telefont, Martin; Muller, Jeff; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices.
- Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Telefont, Martin; Jeff, Muller; Dickscheid, Timo; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Data integration through digital brain atlasing: Human Brain Project infrastructure. Show summary
- Bjaalie, Jan G. (2017). Infrastructure for digital brain atlasing: storing, organizing, visualizing and analyzing large quantities of heterogeneous neuroscience research data.
- Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2017). Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data.
- Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2017). Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations. Show summary
- Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
- Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
- Imad, Jala; Osen, Kirsten Kjelsberg; Clascá, Francisco; Wennberg, Arvind E.; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2017). Enriching and Adding Detail to the Waxholm Space Rat Brain Reference Atlas. Show summary
- Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj; Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Puchades, Maja; Leergaard, Trygve B.; Dickscheid, Timo & Bjaalie, Jan G. (2017). Interactive tools for registering of 2D and 3D images to reference atlases.
- Puchades, Maja; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space. Show summary
- Puchades, Maja; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases. Show summary
- Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Workflow for automated quantification and spatial analysis of labeling in microscoping rodent brain sections. Show summary
- Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Workflow for automated quantification and spatial analysis of labelling in microscoping rodent brain sections.
- Puchades, Maja; Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2016). Spatial registration of serial histological image data to reference brain atlases.
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- Bjaalie, Jan G. (2015). Global collaborative brain research: the International Neuroinformatics Coordinating Facility. Show summary
- Bjaalie, Jan G. (2015). Mouse and rat brain atlasing: tools and templates for web-‐enabled data integration.
- Puchades, Maja Amedjkouh; Darine, Dmitri Aleksandrovitsj; Csúcs, Gergely; Lillehaug, Sveinung; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2015). Feeding rodent brain data to computational models through HBP spatial atlas templates and knowledge graph portal.
- Schubert, N; Axer, M; Graessel, D; Schober, M; Huynh, A; Huysegoms, M; Palomero-Gallagher, N; Bjaalie, Jan G.; Leergaard, Trygve Brauns; Zilles, K & Amunts, K (2015). 3D reconstructed fiber-, cyto- and receptorarchitecture of the rat brain transferred into the Waxholm Space atlas.
- Bjaalie, Jan G. & Leergaard, Trygve Brauns (2014). Neuroscience in the information ages: Brain atlasing goes digital. META. ISSN 1890-1956. (2), s 14- 17
- Leergaard, Trygve Brauns & Bjaalie, Jan G. (2014). Infrastructure for digital atlasing of mouse and rat brain: Rodent Brain WorkBench.
- Leergaard, Trygve Brauns; Coello, Christopher; Papp, Eszter Agnes; Ragan, Tim & Bjaalie, Jan G. (2014). Registration of serial two-photon data to rodent brain Waxholm Space. Frontiers in Neuroinformatics. ISSN 1662-5196. . doi: 10.3389/conf.fninf.2014.18.00059
- Leergaard, Trygve Brauns; Coello, Christopher; Papp, Eszter Agnes; Ragan, Tim & Bjaalie, Jan G. (2014). Registration of serial two-photon data to rodent brain Waxholm Space.
- Leergaard, Trygve Brauns; Lillehaug, Sveinung; Papp, Eszter Agnes; Coello, Christopher; Ragan, Tim & Bjaalie, Jan G. (2014). Waxholm Space atlas template enriched with serial two-photon and histological data.
- Leergaard, Trygve Brauns; Lillehaug, Sveinung; Yetman, Michael J.; Jankowsky, Joanna L. & Bjaalie, Jan G. (2014). Interactive brainwide atlas of tetracycline responsive trans-activator promoter mouse lines.
- Leergaard, Trygve Brauns; Yetman, Michael J.; Lillehaug, Sveinung; Bjaalie, Jan G. & Jankowsky, Joanna L. (2014). Transgene expression in the neuropsin tTA driver line is not restricted to the entorhinal cortex.
- Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj & Bjaalie, Jan G. (2014). Workflow for integration and analysis of histological data in rodent brain Waxholm Space.
- Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj & Bjaalie, Jan G. (2014). Workflow for integration and analysis of histological data in rodent brain Waxholm Space. Frontiers in Neuroinformatics. ISSN 1662-5196. . doi: 10.3389/conf.fninf.2014.18.00060
- Bjaalie, Jan G.; Papp, Eszter Agnes; Kjonigsen, LJ; Johnson, GA; Witter, Menno & Leergaard, Trygve Brauns (2013). Waxholm Space Atlas of the rat brain with detailed hippocampal subdivisions. Show summary
- Syverstad, Gry-Helen Enger; Lillehaug, Sveinung; Nilsson, Lars N. G.; Bjaalie, Jan G.; Leergaard, Trygve B. & Torp, Reidun (2013). Spatial distribution and variance of amyloid-beta load in middle-aged transgenic Alzheimer’s disease mice with both the Artic and Swedish AβPP mutations.
- Jacobsen, Line Melå; Gjerstad, Johannes & Bjaalie, Jan G. (2012). Spinal nociceptive signalling mechanisms to long-lasting low back pain and sciatica. Series of dissertations submitted to the Faculty of Medicine, University of Oslo. No.1387.
- Papp, Eszter Agnes; Leergaard, Trygve Brauns; Johnson, G. Allan & Bjaalie, Jan G. (2012). First generation Waxholm atlas of the Sprague-Dawley rat brain.
- Kjønigsen, Lisa Jannicke; Leergaard, Trygve Brauns; Witter, Menno & Bjaalie, Jan G. (2011). Three-dimensional atlas framework for mapping of projections from the entorhinal cortex to the hippocampal formation in rat. Frontiers in Neuroinformatics. ISSN 1662-5196. . doi: 10.3389/conf.fninf.2011.08.00129
- Moene, Ivar Andre; Darine, Dmitri Aleksandrovitsj; Ramachandran, Muthuraja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2011). Rodent Brain Navigator: database and atlas system for microscopy and imaging data. Frontiers in Neuroinformatics. ISSN 1662-5196. . doi: 10.3389/conf.fninf.2011.08.00159
Published Apr. 13, 2011 2:40 PM
- Last modified Dec. 2, 2020 8:12 AM