Jan G. Bjaalie

Professor
Image of Jan G. Bjaalie
Norwegian version of this page
Phone +47-22851263
Mobile phone +47-91787901
Room L-165
Username
Visiting address Domus Medica Gaustad Sognsvannsveien 9 0372 Oslo
Postal address Department of Molecular Medicine P.O. Box 1105 Blindern N-0317 Oslo

Academic interests

  • Neuroinformatics: from ontologies to cyberinfrastructure for data management and sharing
  • Brain architecture: next generation digital brain atlasing
  • Wiring patterns of the brain / brain connectivity
  • Map transformations in sensory systems of the brain

Background

Education

  • 1990: Ph.D., University of Oslo (neuroanatomy)
  • 1986: M.D., University of Oslo 

Positions held

  • 2017 - : Professor and Group Leader, Leader of the Neuroinformatics Platform (2017 -) and Infrastructure Operations Director (Nov 2017 -) of the EU Human Brain Project, Head of the Norwegian Neuroinformatics Node
  • 2009 - 2016: Head of Institute, Institute of Basic Medical Sciences, University of Oslo
  • 2009 - 2011: Senior advisor, International Neuroinformatics Coordinating Facility, Karolinska institutet, Stockholm, www.incf.org  www   
  • 2006 - 2008: Executive Director, International Neuroinformatics Coordinating Facility, Karolinska institutet, Stockholm
  • 2002 - 2012: Group leader of neuroinformatics, Centre for Molecular Biology and Neuroscience, Norwegian Center of Excellence, University of Oslo
  • 1999: Visiting professor, University of Antwerp and Born Bounge Foundation, Antwerp
  • 1997 - present: Professor, Neural Systems and Graphics Computing Laboratory, Department of Anatomy, University of Oslo
  • 1992 - 1997: Associate Professor, Neural Systems and Graphics Computing Laboratory, Department of Anatomy, University of Oslo 
  • 1986 - 1991: Assistant Professor, Anatomical Institute, University of Oslo

Other professional activities

  • Founding Chief Editor: Frontiers in Neuroinformatics, www.frontiersin.org/neuroinformatics 
  • Section Editor: Brain Structure and Function, Springer Verlag
  • Co-chair, Strategy Committee of the International Brain Initiative, www.internationalbraininitiative.org (2019 -)
  • Member of Advisory Board for the International Initiative for Traumatic Brain Injury Research (InTBIR), appointed by European Commission, DG Research & Innovation (2018 -)
  • Chair of the program committee for Neuroinformatics 2012 (INCF Congress), www.neuroinformatics2012.org
  • Member of the program committee for Neuroinformatics 2011 (INCF Congress), www.neuroinformatics2011.org
  • Chair of the Governing Board of the International Neuroinformatics Coordinating Facility (2013 - 2016)
  • Norwegian representative to the Governing Board of the International Neuroinformatics Coordinating Facility (2011 - 2016)
  • Member of The Society for Neuroscience Committee on Neuroinformatics (2004 - 2009)
  • Member of expert panel Neuroanatomy Ontology, National Institute of Health (2000-2001)
  • Norwegian delegate to OECD MegaScience Forum/Global Science Forum, Neuroinformatics working groups (1997 – 2002) 

Collaboration

  • Leader of the Neuroinformatics Platform (2017 -) and Infrastructure Operations Director (Nov 2018 -) of the EU Human Brain Project
  • Partner in UiO - Faculty of Medicine SERTA (Scientific Excellence Research Thematic Area): Healthy Brain Ageing (2013 - present)
  • Head of the Norwegian Node of the International Neuroinformatics Coordinating Facility (2011 - present)
  • Project coordinator: High Performance Computing for Neuroinformatics, NOTUR (2001 – 2004)ject coordinator, EU-US Task Force funded workshops: “Databasing the brain” (2001, 2006)Pxx
  • PpPProject coordinator, EU-US Task Force and EC Special Support Action workshops: “Databasing the brain” (2001, 2006)
  • Partner in Norwegian Centre of Excellence (Centre for Molecular Biology and Neuroscience) 2002 - 2012 
  • Partner in EU projects (Information transfer and computation in the cerebellum, Biotech, 1998-2001; Neuroinformatics and computational neuroscience in Europe, Thematic network,2000 – 2003; Computation and plasticity in the cerebellar system, Quality of Life, 2002-2004; Human Brain Project, 2013 - )

 

Tags: Brain and nervous system, Neuroinformatics, Brain architecture, Digital brain atlasing, Life science

Publications

  • Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L; Fiorilli, J; Pennartz, CMA; Pavone, FS; Puchades, Maja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2018). Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry.  ISSN 0924-9338.  50, s 70- 76 . doi: https://doi.org/10.1016/j.eurpsy.2018.02.004
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csúcs, Gergely & Bjaalie, Jan G. (2016). Brain-wide mapping of axonal connections: Workflow for automated detection and spatial analysis of labeling in microscopic sections. Frontiers in Neuroinformatics.  ISSN 1662-5196.  10(11) . doi: 10.3389/fninf.2016.00011
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2014). Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage. ISSN 1053-8119.  97, s 374- 386 . doi: 10.1016/j.neuroimage.2014.04.001
  • Odeh, U. R. Francis; Leergaard, Trygve Brauns; Boy, J.; Schmidt, T.; Riess, O. & Bjaalie, Jan G. (2011). Atlas of transgenic Tet-Off Ca2+/calmodulin-dependent protein kinase II and prion protein promoter activity in the mouse brain. NeuroImage.  ISSN 1053-8119.  54(4), s 2603- 2611 . doi: 10.1016/j.neuroimage.2010.11.032
  • Zakiewicz, Izabela Maria; Van Dongen, Yvette C; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2011). Workflow and Atlas System for Brain-Wide Mapping of Axonal Connectivity in Rat. PLoS ONE.  ISSN 1932-6203.  6(8) . doi: 10.1371/journal.pone.0022669
  • Kjonigsen LJ, Leergaard TB, Witter MP, Bjaalie JG. Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region.  Frontiers in Neuroinformatics, 2011; 5:2. doi: 10.3389/fninf.2011.00002
  • Odeh F, Leergaard TB, Boy J, Schmidt T, Riess O, Bjaalie JG. Atlas of transgenic Tet-Off Ca2+/calmodulin-dependent protein kinase II and prion protein promoter activity in the mouse brain. NeuroImage, 2011; 54 2603-11
  • Bjaalie, Jan G. (2008). Understanding the Brain through Neuroinformatics. Frontiers in Neuroscience.  ISSN 1662-4548.  2(1), s 19- 21 . doi: 10.3389/neuro.01.022.2008
  • Moene IA, Subramaniam S, Darine D, Leergaard TB, Bjaalie JG. Towards a workbench for rodent brain image data: systems architecture and design. Neuroinformatics 2007; 5: 35-58
  • Boy J, Leergaard TB, Schmidt T, Odeh F, Bichelmeier U, Nuber S, Holzmann C, Wree A, Prusiner SB, Bujard HB, Riess O, Bjaalie JG. Expression mapping of tetracycline-responsive protein promoter: digital atlasing as a basis for generating cell-specific disease-models. NeuroImage 2006; 33: 449-462
  • Bjaalie JG. Localization in the brain: new solutions emerging. Nature Rev Neurosci. 2002; 3:322-5
  • Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja; Checinska, Martyna; Kleven, Heidi; Jankowsky, Joanna L.; Bjaalie, Jan G. & Leergaard, Trygve B. (2019). Brain-wide distribution of reporter expression in five transgenic tetracycline-transactivator mouse lines. Scientific Data.  ISSN 2052-4463. . doi: https://doi.org/10.1038/sdata.2019.28
  • Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja; Checinska, Martyna; Kleven, Heidi; Jankowsky, Joanna L.; Bjaalie, Jan G. & Leergaard, Trygve B. (2019). Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data.  ISSN 2052-4463.  6, s 1- 15 . doi: 10.1038/sdata.2019.28
  • Puchades, Maja; Csúcs, Gergely; Ledergerber, Debora; Leergaard, Trygve B. & Bjaalie, Jan G. (2019). Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLoS ONE.  ISSN 1932-6203.  14(5) . doi: 10.1371/journal.pone.0216796
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2018). Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy.  ISSN 1662-5129.  12 . doi: 10.3389/fnana.2018.00082
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L; Fiorilli, J; Pennartz, CMA; Pavone, FS; Puchades, Maja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2018). Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry.  ISSN 0924-9338.  50, s 70- 76 . doi: 10.1016/j.eurpsy.2018.02.0
  • Heiland, Tina; Zeitschel, Ulrike; Puchades, Maja; Kuhn, Peer-Hendrik; Lichtenthaler, Stefan F.; Bjaalie, Jan G.; Hartlage-Rübsamen, Maike; Roßner, Steffen & Höfling, Corinna (2018). Defined astrocytic expression of human amyloid precursor protein in Tg2576 mouse brain. Glia.  ISSN 0894-1491.  67(2), s 393- 403 . doi: 10.1002/glia.23550
  • Plank, Anne-Christine; Canneva, Fabio; Raber, Kerstin; Urbach, Yvonne K; Dobner, Julia; Puchades, Maja; Bjaalie, Jan G.; Gillmann, Clarissa; Bäuerle, Tobias; Riess, Olaf; Nguyen, Hoa H.P. & von Hörsten, Stephan (2018). Early Alterations in Operant Performance and Prominent Huntingtin Aggregation in a Congenic F344 Rat Line of the Classical CAGn51trunc Model of Huntington Disease.. Frontiers in Neuroscience.  ISSN 1662-4548.  12 . doi: 10.3389/fnins.2018.00011
  • Dempsey, Bowen; Le, Sheng; Turner, Anita; Bokiniec, Phil; Ramadas, Radhika; Bjaalie, Jan G.; Menuet, Clement; Neve, Rachael; Allen, Andrew M; Goodchild, Ann K & McMullan, Simon (2017). Mapping and analysis of the connectome of sympathetic premotor neurons in the rostral ventrolateral medulla of the rat using a volumetric brain atlas. Frontiers in Neural Circuits.  ISSN 1662-5110.  11 . doi: 10.3389/fncir.2017.00009
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csúcs, Gergely & Bjaalie, Jan G. (2016). Brain-wide mapping of axonal connections: Workflow for automated detection and spatial analysis of labeling in microscopic sections. Frontiers in Neuroinformatics.  ISSN 1662-5196.  10(11) . doi: 10.3389/fninf.2016.00011 Full text in Research Archive.
  • Schubert, N; Axer, M; Schober, M; Huynh, A; Huysegoms, M; Palomero-Gallagher, N; Bjaalie, Jan G.; Leergaard, Trygve Brauns; Kirlangic, Mehmet E.; Amunts, K & Zilles, Karl (2016). 3D reconstructed cyto-, muscarinic M<sub>2</sub> receptor, and fiber architecture of the rat brain registered to the waxholm space atlas. Frontiers in Neuroanatomy.  ISSN 1662-5129.  10(MAY) . doi: 10.3389/fnana.2016.00051
  • Yetman, Michael J.; Lillehaug, Sveinung; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Jankowsky, Joanna L. (2016). Transgene expression in the Nop-tTA driver line is not inherently restricted to the entorhinal cortex. Brain Structure and Function.  ISSN 1863-2653.  221(4), s 2231- 2249 . doi: 10.1007/s00429-015-1040-9
  • Boccara, Charlotte Nina; Kjønigsen, Lisa Jannicke; Hammer, Ingvild Marie F.; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Witter, Menno (2015). A three-plane architectonic atlas of the rat hippocampal region. Hippocampus.  ISSN 1050-9631.  25(7), s 838- 857 . doi: 10.1002/hipo.22407
  • Kjønigsen, Lisa Jannicke; Lillehaug, Sveinung; Bjaalie, Jan G.; Witter, Menno & Leergaard, Trygve Brauns (2015). Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging. NeuroImage.  ISSN 1053-8119.  108, s 441- 449 . doi: 10.1016/j.neuroimage.2014.12.080 Full text in Research Archive.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2015). Addendum to “Waxholm Space atlas of the Sprague Dawley rat brain” [NeuroImage 97 (2014) 374-386]. NeuroImage.  ISSN 1053-8119.  105, s 561- 562 . doi: 10.1016/j.neuroimage.2014.10.017
  • Sergejeva, Marina; Papp, Eszter Agnes; Bakker, Rembrandt; Gaudnek, Manuel A.; Okamura-Oho, Yuko; Boline, Jyl; Bjaalie, Jan G. & Hess, Andreas (2015). Anatomical landmarks for registration of experimental image data to volumetric rodent brain atlasing templates. Journal of Neuroscience Methods.  ISSN 0165-0270.  240, s 161- 169 . doi: 10.1016/j.jneumeth.2014.11.005
  • Tiesinga, Paul; Bakker, Rembrandt; Hill, Sean & Bjaalie, Jan G. (2015). Feeding the human brain model. Current Opinion in Neurobiology.  ISSN 0959-4388.  32, s 107- 114 . doi: 10.1016/j.conb.2015.02.003
  • Zakiewicz, Izabela Maria; Majka, Piotr; Wòjcik, Daniel K.; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2015). Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex. PLoS ONE.  ISSN 1932-6203.  10(9) . doi: 10.1371/journal.pone.0137571
  • Lillehaug, Sveinung; Syverstad, Gry-Helen Enger; Nilsson, Lars; Bjaalie, Jan G.; Leergaard, Trygve Brauns & Torp, Reidun (2014). Brainwide distribution and variance of amyloid-beta deposits in tg-ArcSwe mice. Neurobiology of Aging.  ISSN 0197-4580.  35(3), s 556- 564 . doi: 10.1016/j.neurobiolaging.2013.09.013
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Calabrese, Evan; Johnson, G. Allan & Bjaalie, Jan G. (2014). Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage.  ISSN 1053-8119.  97, s 374- 386 . doi: 10.1016/j.neuroimage.2014.04.001
  • Zakiewicz, Izabela Maria; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2014). Brain-wide map of efferent projections from rat barrel cortex. Frontiers in Neuroinformatics.  ISSN 1662-5196.  8 . doi: 10.3389/fninf.2014.00005
  • Hines, Kim Eigard; Bolle, Erlend; Rissi, Michael; Volgyes, David; Dorholt, Ole; Røhne, Ole Myren; Stapnes, Steinar; Bjaalie, Jan G. & Skretting, Arne (2013). COMPET: High resolution high sensitivity MRI compatible pre-clinical PET scanner. Nuclear Instruments and Methods in Physics Research Section A : Accelerators, Spectrometers, Detectors and Associated Equipment.  ISSN 0168-9002.  732, s 581- 585 . doi: 10.1016/j.nima.2013.05.148
  • Nagelhus, Erlend Arnulf; Amiry-Moghaddam, Mahmood; Bergersen, Linda Hildegard; Bjaalie, Jan G.; Eriksson, Jens; Gundersen, Vidar; Leergaard, Trygve Brauns; Morth, Jens Preben; Storm-Mathisen, Jon; Torp, Reidun; Walhovd, Kristine B & Tønjum, Tone (2013). The glia doctrine: Addressing the role of glial cells in healthy brain ageing. Mechanisms of Ageing and Development.  ISSN 0047-6374.  134(10), s 449- 459 . doi: 10.1016/j.mad.2013.10.001
  • Stensrud, Mats Julius; Chaudhry, Farrukh Abbas; Leergaard, Trygve Brauns; Bjaalie, Jan G. & Gundersen, Vidar (2013). Vesicular glutamate transporter-3 in the rodent brain: Vesicular colocalization with vesicular -aminobutyric acid transporter. Journal of Comparative Neurology.  ISSN 0021-9967.  521(13), s 3042- 3056 . doi: 10.1002/cne.23331
  • White, NS; Leergaard, Trygve Brauns; D'Arceuil, Helen; Bjaalie, Jan G. & Dale, AM (2013). Probing tissue microstructure with Restriction Spectrum Imaging: Histological and theoretical validation. Human Brain Mapping.  ISSN 1065-9471.  34(2), s 327- 346 . doi: 10.1002/hbm.21454
  • Rissi, Michael; Bolle, Erlend; Volgyes, David; Bjaalie, Jan G.; Dorholt, Ole; Hines, Kim Eigard; Røhne, Ole Myren; Skretting, Arne & Stapnes, Steinar (2012). Characterization of a high resolution and high sensitivity pre-clinical PET scanner with 3D event reconstruction. Nuclear Instruments and Methods in Physics Research Section A : Accelerators, Spectrometers, Detectors and Associated Equipment.  ISSN 0168-9002.  695, s 135- 138 . doi: 10.1016/j.nima.2011.10.042
  • Kjønigsen, Lisa Jannicke; Leergaard, Trygve Brauns; Witter, Menno & Bjaalie, Jan G. (2011). Digital atlas of anatomical subdivisions and boundaries of the rat hippocampal region. Frontiers in Neuroinformatics.  ISSN 1662-5196.  8(5) . doi: 10.3389/fninf.2011.00002
  • Odeh, U. R. Francis; Leergaard, Trygve Brauns; Boy, J.; Schmidt, T.; Riess, O. & Bjaalie, Jan G. (2011). Atlas of transgenic Tet-Off Ca2+/calmodulin-dependent protein kinase II and prion protein promoter activity in the mouse brain. NeuroImage.  ISSN 1053-8119.  54(4), s 2603- 2611 . doi: 10.1016/j.neuroimage.2010.11.032
  • Rissi, Michael; Bolle, Erlend; Buskenes, Jo Inge; Dorholt, Ole; Røhne, Ole Myren; Stapnes, Steinar; Bjaalie, Jan G. & Skretting, Arne (2011). COMPET – high resolution and high sensitivity PET scanner with novel readout concept: Setup and simulations. Nuclear Instruments and Methods in Physics Research Section A : Accelerators, Spectrometers, Detectors and Associated Equipment.  ISSN 0168-9002.  648, s S93- S95 . doi: 10.1016/j.nima.2010.12.097
  • Zakiewicz, Izabela Maria; Van Dongen, Yvette C; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2011). Workflow and Atlas System for Brain-Wide Mapping of Axonal Connectivity in Rat. PLoS ONE.  ISSN 1932-6203.  6(8) . doi: 10.1371/journal.pone.0022669
  • Leergaard, Trygve Brauns; White, Nathan; De Crespigny, Alex; Bolstad, Ingeborg; D'Arceuil, Helen; Bjaalie, Jan G. & Dale, Anders M (2010). Quantitative Histological Validation of Diffusion MRI Fiber Orientation Distributions in the Rat Brain. PLoS ONE.  ISSN 1932-6203.  5(1) . doi: 10.1371/journal.pone.0008595
  • Holmseth, Silvia; Scott, Heather A; Real, Katia; Lehre, Knut Petter Dæhlin; Leergaard, Trygve Brauns; Bjaalie, Jan G. & Danbolt, Niels Christian (2009). The concentrations and distributions of three C-terminal variants of the GLT1 (EAAT2; slc1a2) glutamate transporter protein in rat brain tissue suggest differential regulation. Neuroscience.  ISSN 0306-4522.  162(4), s 1055- 1071 . doi: 10.1016/j.neuroscience.2009.03.048
  • Kjønigsen, Lisa Jannicke; Leergaard, Trygve Brauns; Moene, Ivar Andre; Witter, Menno P & Bjaalie, Jan G. (2009). Interactive atlas of the rat hippocampus integrating high-resolution histological images and boundary definitions. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.neuro.11.2009.08.013
  • Papp, Eszter Agnes & Bjaalie, Jan G. (2009). Automatic detection of labelling patterns in microscopic sections: methods and workflows. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.neuro.11.2009.08.031
  • Zakiewicz, Izabela Maria; Van Dongen, Yvette C; Moene, Ivar Andre; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2009). Towards an interactive digital atlas system for exploring anatomical connectivity patterns in the entire rat brain. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.neuro.11.2009.08.014
  • Bjaalie, Jan G. (2008). Understanding the Brain through Neuroinformatics. Frontiers in Neuroscience.  ISSN 1662-4548.  2(1), s 19- 21 . doi: 10.3389/neuro.01.022.2008.

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  • Sand, Olav; Sjaastad, Øystein; Haug, Egil & Bjaalie, Jan G. (2018). Menneskekroppen - Fysiologi og anatomi, 3. utgave. Gyldendal Akademisk.  ISBN 978-82-05-50482-0.  666 s.
  • Sjaastad, Øystein; Toverud, Kari C.; Sand, Olav; Bjaalie, Jan G. & Egil, Haug (2018). Arbeidsbok til Menneskekroppen - Fysiologi og anatomi, 3. utgave. Gyldendal Akademisk.  ISBN 978-82-05-51403-4.  224 s.
  • Sand, Olav; Sjaastad, Øystein; Haug, Egil & Bjaalie, Jan G. (2015). Menneskets anatomi og fysiologi 3. utgave. Gads Forlag.  ISBN 978-87-12-05107-7.  538 s.
  • Sjaastad, Øystein; Toverud, Kari C.; Sand, Olav; Bjaalie, Jan G. & Egil, Haug (2015). Studieoppgaver til Menneskets anatomi og fysiologi. Gads forlag.  ISBN 9788712050353.  203 s.
  • Sand, Olav; Sjaastad, Øystein; Haug, Egil & Bjaalie, Jan G. (2011). Ihminen - Fysiologia ja anatomia. Sanoma Pro Oy.  ISBN 978-952-63-0898-2.  571 s.

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  • Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Groeneboom, Nicolaas Ervik; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2019). Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases. Show summary
  • Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Markovic, Milica; Kleven, Heidi; Zafarnia, Sara; Köhnen, Stefan; Legouée, Elodie; Puchades, Maja; Schmid, Oliver; Davison, Andrew P.; Muller, Jeff; Dicksheid, Timo; Leergaard, Trygve B. & Bjaalie, Jan G. (2018). HBP Curation service: Share your data via the Neuroinformatics platform.
  • Bjaalie, Jan G. (2018). Data sharing in neuroscience: traditions, standards, and transformations.
  • Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Bjaalie, Jan G. & Leergaard, Trygve B. (2018). Best practices for determining and documenting neuroanatomical locations in the rodent brain.
  • Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Puchades, Maja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2018). Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure.
  • Papp, Eszter Agnes; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Volumetric atlasing in the rodent brain: connecting experimental image data to standard anatomical space. Full text in Research Archive. Show summary
  • von Linstow, Christian Ulrich; Yates, Sharon Christine; Leergaard, Trygve B.; Plank, A-C; von Hörsten, S.; Puchades, Maja & Bjaalie, Jan G. (2018). Whole brain analysis of Huntingtin aggregates in the F344 transgenic rat model of Huntington’s disease.
  • Yates, Sharon Christine; Puchades, Maja; kreshuk, anna; Kutra, Dominik; Leergaard, Trygve B.; Bjaalie, Jan G. & Groeneboom, Nicolaas (2018). HBP Analytic Workflow: from Microscopic Image Data to Extracted Features in Atlas Space.
  • Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G. & Dicksheid, Timo (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
  • Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G. & Dicksheid, Timo (2018). Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform.
  • Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2018). Mapping topographical organization in mouse brain subcortical axonal projections using Human Brain Project infrastructure.
  • Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen; Kleven, Heidi; Puchades, Maja; Suzen, M; Denker, Michael; Davison, A.; Grün, Sonja; Leprince, Y; Dickscheid, Timo; McMurtrie, C; Telefont, Martin; Muller, Jeff; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices.
  • Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Telefont, Martin; Jeff, Muller; Dickscheid, Timo; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Data integration through digital brain atlasing: Human Brain Project infrastructure. Show summary
  • Bjaalie, Jan G. (2017). Infrastructure for digital brain atlasing: storing, organizing, visualizing and analyzing large quantities of heterogeneous neuroscience research data.
  • Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve B. (2017). Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data.
  • Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2017). Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations. Show summary
  • Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
  • Coello, Sebastian Christopher; Leergaard, Trygve B. & Bjaalie, Jan G. (2017). Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space.
  • Imad, Jala; Kleven, Heidi; Clascá, Francisco; Wennberg, Arvind Eirik; Osen, Kirsten Kjelsberg; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Witter, Menno; Bjaalie, Jan G. & Leergaard, Trygve B. (2017). Enriching and adding detail to the Waxholm Space rat brain reference atlas.
  • Imad, Jala; Osen, Kirsten Kjelsberg; Clascá, Francisco; Wennberg, Arvind E.; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2017). Enriching and Adding Detail to the Waxholm Space Rat Brain Reference Atlas. Show summary
  • Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj; Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Puchades, Maja; Leergaard, Trygve B.; Dickscheid, Timo & Bjaalie, Jan G. (2017). Interactive tools for registering of 2D and 3D images to reference atlases.
  • Puchades, Maja; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space. Show summary
  • Puchades, Maja; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases. Show summary
  • Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Workflow for automated quantification and spatial analysis of labeling in microscoping rodent brain sections. Show summary
  • Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2017). Workflow for automated quantification and spatial analysis of labelling in microscoping rodent brain sections.
  • Puchades, Maja; Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2016). Spatial registration of serial histological image data to reference brain atlases.
  • Bjaalie, Jan G. (2015). Brain atlasing and the role of the International Neuroinformatics Coordinating Facility (INCF) in global neuroscience research. Show summary
  • Bjaalie, Jan G. (2015). Brain atlasing: rodent to human.
  • Bjaalie, Jan G. (2015). Global collaborative brain research: the International Neuroinformatics Coordinating Facility. Show summary
  • Bjaalie, Jan G. (2015). Mouse and rat brain atlasing: tools and templates for web-­‐enabled data integration.
  • Puchades, Maja Amedjkouh; Darine, Dmitri Aleksandrovitsj; Csúcs, Gergely; Lillehaug, Sveinung; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2015). Feeding rodent brain data to computational models through HBP spatial atlas templates and knowledge graph portal.
  • Schubert, N; Axer, M; Graessel, D; Schober, M; Huynh, A; Huysegoms, M; Palomero-Gallagher, N; Bjaalie, Jan G.; Leergaard, Trygve Brauns; Zilles, K & Amunts, K (2015). 3D reconstructed fiber-, cyto- and receptorarchitecture of the rat brain transferred into the Waxholm Space atlas.
  • Bjaalie, Jan G. & Leergaard, Trygve Brauns (2014). Neuroscience in the information ages: Brain atlasing goes digital. META.  ISSN 1890-2987.  (2), s 14- 17
  • Leergaard, Trygve Brauns & Bjaalie, Jan G. (2014). Infrastructure for digital atlasing of mouse and rat brain: Rodent Brain WorkBench.
  • Leergaard, Trygve Brauns; Coello, Christopher; Papp, Eszter Agnes; Ragan, Tim & Bjaalie, Jan G. (2014). Registration of serial two-photon data to rodent brain Waxholm Space. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.fninf.2014.18.00059
  • Leergaard, Trygve Brauns; Coello, Christopher; Papp, Eszter Agnes; Ragan, Tim & Bjaalie, Jan G. (2014). Registration of serial two-photon data to rodent brain Waxholm Space.
  • Leergaard, Trygve Brauns; Lillehaug, Sveinung; Papp, Eszter Agnes; Coello, Christopher; Ragan, Tim & Bjaalie, Jan G. (2014). Waxholm Space atlas template enriched with serial two-photon and histological data.
  • Leergaard, Trygve Brauns; Lillehaug, Sveinung; Yetman, Michael J.; Jankowsky, Joanna L. & Bjaalie, Jan G. (2014). Interactive brainwide atlas of tetracycline responsive trans-activator promoter mouse lines.
  • Leergaard, Trygve Brauns; Yetman, Michael J.; Lillehaug, Sveinung; Bjaalie, Jan G. & Jankowsky, Joanna L. (2014). Transgene expression in the neuropsin tTA driver line is not restricted to the entorhinal cortex.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj & Bjaalie, Jan G. (2014). Workflow for integration and analysis of histological data in rodent brain Waxholm Space.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj & Bjaalie, Jan G. (2014). Workflow for integration and analysis of histological data in rodent brain Waxholm Space. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.fninf.2014.18.00060
  • Bjaalie, Jan G.; Papp, Eszter Agnes; Kjonigsen, LJ; Johnson, GA; Witter, Menno & Leergaard, Trygve Brauns (2013). Waxholm Space Atlas of the rat brain with detailed hippocampal subdivisions. Show summary
  • Syverstad, Gry-Helen Enger; Lillehaug, Sveinung; Nilsson, Lars N. G.; Bjaalie, Jan G.; Leergaard, Trygve B. & Torp, Reidun (2013). Spatial distribution and variance of amyloid-beta load in middle-aged transgenic Alzheimer’s disease mice with both the Artic and Swedish AβPP mutations.
  • Jacobsen, Line Melå; Gjerstad, Johannes & Bjaalie, Jan G. (2012). Spinal nociceptive signalling mechanisms to long-lasting low back pain and sciatica. Series of dissertations submitted to the Faculty of Medicine, University of Oslo. No.1387.
  • Papp, Eszter Agnes; Leergaard, Trygve Brauns; Johnson, G. Allan & Bjaalie, Jan G. (2012). First generation Waxholm atlas of the Sprague-Dawley rat brain.
  • Kjønigsen, Lisa Jannicke; Leergaard, Trygve Brauns; Witter, Menno & Bjaalie, Jan G. (2011). Three-dimensional atlas framework for mapping of projections from the entorhinal cortex to the hippocampal formation in rat. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.fninf.2011.08.00129
  • Moene, Ivar Andre; Darine, Dmitri Aleksandrovitsj; Ramachandran, Muthuraja; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2011). Rodent Brain Navigator: database and atlas system for microscopy and imaging data. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.fninf.2011.08.00159
  • Papp, Eszter Agnes; Leergaard, Trygve B.; Jiang, Yi; Johnson, G. Allan & Bjaalie, Jan G. (2011). Multimodal digital atlas of the rat brain: data integration in a high resolution volumetric template. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.fninf.2011.08.00013
  • Zakiewicz, Izabela Maria; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2011). Neuroinformatics web applications for 3-D analysis of brain connectivity: anatomical organization of subcortical projections from whisker and forelimb regions of the rat somatosensory cortex. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.fninf.2011.08.00060
  • Van Dongen, Yvette C; Molvær, Arnold JN; van Camp, Nadja; Blockx, I; Urbach, Yvonne K; Raber, Kerstin; Van Der Linden, A; von Hörsten, Stephan; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2010). Structural analysis of the cortico-basal ganglia connectivity in a transgenic rat model of Huntington's disease.
  • Van Dongen, Yvette C; Molvær, Arnold John Ngugi; Van Camp, Nadja; Blockx, I; Urbach, Yvonne K; Raber, Kerstin; Van Der Linden, A; von Hörsten, Stephan; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2010). Reduced corticostriatal but intact striatofugal projections in transgenic rat model of Huntington's disease.
  • Zakiewicz, Izabela Maria; Van Dongen, Yvette C; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2010). Workflow and database system for brain-wide mapping of axonal connectivity in rat.
  • Melsom, Caroline B.; Leergaard, Trygve Brauns; Darine, Dmitri Aleksandrovitsj; Dale, Anders M & Bjaalie, Jan G. (2009). Three-dimensional visualization of rat corticofugal axonal trajectories using manganese enhanced magnetic resonance imaging and digital atlasing. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.neuro.11.2009.08.027
  • Boy, J.; Schmidt, T.; Bottcher, M; Schumann, U.; Leergaard, Trygve Brauns; Odeh, Francis; Wolburg, H; Nuber, S.; Holzmann, C.; Schmitt, I; Zimmermann, F; Bjaalie, Jan G. & Riess, O. (2009). Clinical symptoms in SCA3 are reversible: a study using an inducible mouse model of SCA3. Journal of Neurochemistry.  ISSN 0022-3042.  110, s 97- 97
  • Haselgrove, C; Larsson, A; Bjaalie, Jan G.; Breeze, J; Buccigrossi, R; Kennedy, D; Preuss, N & Ritz, R (2009). Data Sharing Between NITRC and the INCF Software Center. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.neuro.11.2009.08.075
  • Hjornevik, Trine; Qu, Hong; Gjerstad, J; Jacobsen, Line Melå; Bjaalie, Jan G. & Willoch, Frode (2009). Rat model of pathological pain in the central nervous system. Journal of Neurochemistry.  ISSN 0022-3042.  109, s 309- 309
  • Kjønigsen, Lisa Jannicke; Leergaard, Trygve Brauns; Bjaalie, Jan G. & Witter, Menno P (2009). Interactive Resource for Cytoarchitectonic Delineation of the Rat Hippocampus Formation and Associated Parahippocampal Cortex.
  • Odeh, U. R. Francis; Schmidt, T.; Boy, J.; Moene, Ivar Andre; Riess, O.; Bjaalie, Jan G. & Leergaard, Trygve Brauns (2009). Interactive mouse brain atlas of tetracycline-responsive calmodulin-dependent protein kinase II- and prion protein promoter expression. Frontiers in Neuroinformatics.  ISSN 1662-5196. . doi: 10.3389/conf.neuro.11.2009.08.012
  • Zakiewicz, Izabela Maria; Van Dongen, Yvette C; Moene, Ivar Andre; Leergaard, Trygve Brauns & Bjaalie, Jan G. (2009). Towards an interactive digital atlas system for exploring anatomical connectivity patterns in the entire rat brain.
  • White, Nathan; Leergaard, Trygve Brauns; Bolstad, Ingeborg; Bjaalie, Jan G.; D'Arceuil, Helen; De Crespigny, Alex & Dale, Anders M. (2008). Quantitative histological validation of fiber orientation distributions based on high-angular resolution diffusion imaging.

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Published Apr. 13, 2011 2:40 PM - Last modified Feb. 20, 2019 11:26 AM