Philippe Collas
Professor
-
Avdeling for molekylærmedisin
English version of this page
Telefon
+47 22851066
Rom
2250
Brukernavn
Besøksadresse
Sognsvannsveien 9
Domus Medica
0372 Oslo
Postadresse
Postboks 1110 Blindern
0317 Oslo
Publikasjoner
-
Potolitsyna, Evdokiia; Hazell Pickering, Sarah Jai; Bellanger, Aurelie Nathalie Pascale; Germier, Thomas Lodewijk Guy; Collas, Philippe & Briand, Nolwenn (2024). Cytoskeletal rearrangement precedes nucleolar remodeling during adipogenesis. Communications Biology. ISSN 2399-3642. 7(1). doi: 10.1038/s42003-024-06153-1.
-
Rossini, Roberto; Oshaghi, Mohammadsaleh; Nekrasov, Maxim; Bellanger, Aurelie Nathalie Pascale; Domaschenz, Renae & Dijkwel, Yasmin [Vis alle 10 forfattere av denne artikkelen] (2023). Multi-level 3D genome organization deteriorates during breast cancer progression. bioRxiv. ISSN 2692-8205. doi: 10.1101/2023.11.26.568711.
-
Voon, Hsiao P. J.; Hii, Linda; Garvie, Andrew; Udugama, Maheshi; Krug, Brian & Russo, Caterina [Vis alle 18 forfattere av denne artikkelen] (2023). Pediatric glioma histone H3.3 K27M/G34R mutations drive abnormalities in PML nuclear bodies. Genome Biology. ISSN 1465-6906. 24(1). doi: 10.1186/s13059-023-03122-5. Fulltekst i vitenarkiv
-
Fracassi, C; Ugge', M; Abdelhalim, Mohamed Ibrahim Mohamed; Zapparoli, E; Simoni, M & Magliulo, D [Vis alle 11 forfattere av denne artikkelen] (2023). PML modulates epigenetic composition of chromatin to regulate expression of pro-metastatic genes in triple-negative breast cancer. Nucleic Acids Research (NAR). ISSN 0305-1048. 51(20), s. 11024–11039. doi: 10.1093/nar/gkad819. Fulltekst i vitenarkiv
-
Russ, Brendan E.; Barugahare, Adele; Dakle, Pushkar; Tsyganov, Kirril; Quon, Sara & Yu, Bingfei [Vis alle 22 forfattere av denne artikkelen] (2023). Active maintenance of CD8<sup>+</sup> T cell naivety through regulation of global genome architecture. Cell reports. ISSN 2211-1247. 42(10). doi: 10.1016/j.celrep.2023.113301. Fulltekst i vitenarkiv
-
Benarroch, Louise; Madsen-Østerbye, Julia-Kristina; Abdelhalim, Mohamed Ibrahim Mohamed; Mamchaoui, Kamel; Ohana, Jessica & Bigot, Anne [Vis alle 10 forfattere av denne artikkelen] (2023). Cellular and Genomic Features of Muscle Differentiation from Isogenic Fibroblasts and Myoblasts. Cells. ISSN 2073-4409. 12(15). doi: 10.3390/cells12151995. Fulltekst i vitenarkiv
-
Madsen-Østerbye, Julia-Kristina; Abdelhalim, Mohamed Ibrahim Mohamed; Hazell Pickering, Sarah Jai & Collas, Philippe (2023). Gene Regulatory Interactions at Lamina-Associated Domains. Genes. ISSN 2073-4425. 14(2), s. 1–15. doi: 10.3390/genes14020334. Fulltekst i vitenarkiv
-
Mosbaha, Helena; Akinci, Baris; Araújo-Vilar, David; Tudela, Juan Carrion; Collas, Philippe & Ceccarinif, Giovanni [Vis alle 29 forfattere av denne artikkelen] (2022). Proceedings of the annual meeting of the European Consortium of Lipodystrophies (ECLip) Cambridge, UK, 7–8 April 2022. Annales d'Endocrinologie. ISSN 0003-4266. 83(6), s. 461–468. doi: 10.1016/j.ando.2022.07.674.
-
Potolitsyna, Evdokiia; Hazell Pickering, Sarah Jai; Tooming-Klunderud, Ave; Collas, Philippe & Briand, Nolwenn (2022). De novo annotation of lncRNA HOTAIR transcripts by long-read RNA capture-seq reveals a differentiation-driven isoform switch. BMC Genomics. ISSN 1471-2164. 23(1). doi: 10.1186/s12864-022-08887-w. Fulltekst i vitenarkiv
-
Kuo, Feng-Chih; Neville, Matt J.; Sabaratnam, Rugivan; Wesolowska-Andersen, Agata; Phillips, Daniel & Wittemans, Laura B.L. [Vis alle 17 forfattere av denne artikkelen] (2022). HOTAIR interacts with PRC2 complex regulating the regional preadipocyte transcriptome and human fat distribution. Cell reports. ISSN 2211-1247. 40(4). doi: 10.1016/j.celrep.2022.111136. Fulltekst i vitenarkiv
-
Potolitsyna, Evdokiia; Hazell Pickering, Sarah Jai; Germier, Thomas Lodewijk Guy; Collas, Philippe & Briand, Nolwenn (2022). Long non-coding RNA HOTAIR regulates cytoskeleton remodeling and lipid storage capacity during adipogenesis. Scientific Reports. ISSN 2045-2322. 12(1). doi: 10.1038/s41598-022-14296-6. Fulltekst i vitenarkiv
-
Madsen-Østerbye, Julia-Kristina; Bellanger, Aurelie Nathalie Pascale; Galigniana, Natalia & Collas, Philippe (2022). Biology and Model Predictions of the Dynamics and Heterogeneity of Chromatin-Nuclear Lamina Interactions. Frontiers in Cell and Developmental Biology. ISSN 2296-634X. 10, s. 1–13. doi: 10.3389/fcell.2022.913458. Fulltekst i vitenarkiv
-
Bellanger, Aurelie Nathalie Pascale; Madsen-Østerbye, Julia-Kristina; Galigniana, Natalia & Collas, Philippe (2022). Restructuring of Lamina-Associated Domains in Senescence and Cancer. Cells. ISSN 2073-4409. 11(11). doi: 10.3390/cells11111846. Fulltekst i vitenarkiv
-
Udugama, Maheshi; Vinod, Benjamin; Chan, F. Lyn; Hii, Linda; Garvie, Andrew & Collas, Philippe [Vis alle 13 forfattere av denne artikkelen] (2022). Histone H3.3 phosphorylation promotes heterochromatin formation by inhibiting H3K9/K36 histone demethylase. Nucleic Acids Research (NAR). ISSN 0305-1048. 50(8), s. 4500–4514. doi: 10.1093/nar/gkac259. Fulltekst i vitenarkiv
-
Madsen-Østerbye, Julia-Kristina; Abdelhalim, Mohamed Ibrahim Mohamed; Baudement, Marie-Odile & Collas, Philippe (2022). Local euchromatin enrichment in lamina-associated domains anticipates their repositioning in the adipogenic lineage. Genome Biology. ISSN 1465-6906. 23, s. 1–19. doi: 10.1186/s13059-022-02662-6. Fulltekst i vitenarkiv
-
Liyakat Ali, Tharvesh Moideen; Brunet, Annaëlle; Collas, Philippe & Paulsen, Jonas (2021). TAD cliques predict key features of chromatin organization. BMC Genomics. ISSN 1471-2164. 22(1). doi: 10.1186/s12864-021-07815-8. Fulltekst i vitenarkiv
-
Udugama, Maheshi; Hii, Linda; Garvie, A.; Cervini, M.; Vinod, B. & Chan, F. Lyn [Vis alle 11 forfattere av denne artikkelen] (2021). Mutations inhibiting KDM4B drive ALT activation in ATRX-mutated glioblastomas. Nature Communications. ISSN 2041-1723. 12(1), s. 1–11. doi: 10.1038/s41467-021-22543-z. Fulltekst i vitenarkiv
-
Brunet, Annaëlle; Destainville, Nicolas & Collas, Philippe (2021). Physical constraints in polymer modeling of chromatin associations with the nuclear periphery at kilobase scale. Nucleus. ISSN 1949-1034. 12(1), s. 6–20. doi: 10.1080/19491034.2020.1868105. Fulltekst i vitenarkiv
-
Narud, Birgitte; Khezri, Abdolrahman; Zeremichael, Teklu Tewoldebrhan; Stenseth, Else-Berit; Heringstad, Bjørg & Johannisson, Anders [Vis alle 10 forfattere av denne artikkelen] (2021). Sperm chromatin integrity and DNA methylation in Norwegian Red bulls of contrasting fertility. Molecular Reproduction and Development. ISSN 1040-452X. 88(3), s. 187–200. doi: 10.1002/mrd.23461. Fulltekst i vitenarkiv
-
Vietri, Marina; Schultz, Sebastian; Bellanger, Aurélie Nathalie Pascale; Jones, Carl; Petersen, Louise I & Raiborg, Camilla [Vis alle 20 forfattere av denne artikkelen] (2020). Unrestrained ESCRT-III drives micronuclear catastrophe and chromosome fragmention. Nature Cell Biology. ISSN 1465-7392. 22, s. 856–867. doi: 10.1038/s41556-020-0537-5. Fulltekst i vitenarkiv
-
Briand, Nolwenn & Collas, Philippe (2020). Lamina-associated domains: Peripheral matters and internal affairs. Genome Biology. ISSN 1465-6906. 21:85, s. 1–25. doi: 10.1186/s13059-020-02003-5. Fulltekst i vitenarkiv
-
Toribio-Fernández, R; Herrero-Fernandez, B; Zorita, V; López, JA; Vázquez, J & Criado, G [Vis alle 11 forfattere av denne artikkelen] (2019). Lamin A/C deficiency in CD4+ T-cells enhances regulatory T-cells and prevents inflammatory bowel disease. Journal of Pathology. ISSN 0022-3417. 249(4), s. 509–522. doi: 10.1002/path.5332.
-
Ménard, C; Dulong, J; Roulois, D; Hébraud, B; Verdière, L & Pangault, C [Vis alle 19 forfattere av denne artikkelen] (2019). Integrated Transcriptomic, Phenotypic, and Functional Study Reveals Tissue-Spesific Immune Properties of Mesenchymal Stromal Cells. Stem Cells. ISSN 1066-5099. 38, s. 146–159. doi: 10.1002/stem.3077.
-
Brunet, Annaëlle; Forsberg, Anna Frida; Fan, Qiong; Sæther, Thomas & Collas, Philippe (2019). Nuclear lamin B1 interactions with chromatin during the circadian cycle are uncoupled from periodic gene expression. Frontiers in Genetics. ISSN 1664-8021. 10. doi: 10.3389/fgene.2019.00917. Fulltekst i vitenarkiv Vis sammendrag
-
Paulsen, Jonas; Liyakat Ali, Tharvesh Moideen; Nekrasov, Maxim; Delbarre, Erwan; Baudement, Marie-Odile & Kurscheid, Sebastian [Vis alle 8 forfattere av denne artikkelen] (2019). Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation. Nature Genetics. ISSN 1061-4036. 51(5), s. 835–843. doi: 10.1038/s41588-019-0392-0.
-
Collas, Philippe; Liyakat Ali, Tharvesh Moideen; Brunet, Annaëlle & Germier, Thomas (2019). Finding friends in the crowd: Three-dimensional cliques of topological genomic domains. Frontiers in Genetics. ISSN 1664-8021. 10:602, s. 1–11. doi: 10.3389/fgene.2019.00602. Fulltekst i vitenarkiv
-
Spirkoski, Jane; Shah, Akshay; Reiner, Andrew Henry; Collas, Philippe & Delbarre, Erwan (2019). PML modulates H3.3 targeting to telomeric and centromeric repeats in mouse fibroblasts. Biochemical and Biophysical Research Communications - BBRC. ISSN 0006-291X. 511(4), s. 882–888. doi: 10.1016/j.bbrc.2019.02.087.
-
Forsberg, Frida; Brunet, Annaëlle; Liyakat Ali, Tharvesh Moideen & Collas, Philippe (2019). Interplay of lamin A and lamin B LADs on the radial positioning of chromatin. Nucleus. ISSN 1949-1034. 10(1), s. 7–20. doi: 10.1080/19491034.2019.1570810. Fulltekst i vitenarkiv
-
Briand, Nolwenn; Cahyani, Inswasti; Madsen-Østerbye, Julia-Kristina Jensen; Paulsen, Jonas; Rønningen, Torunn & Sørensen, Anita Løvstad [Vis alle 7 forfattere av denne artikkelen] (2018). Lamin A, Chromatin and FPLD2:Not ust a Peripheral Ménage-à-Trois. Frontiers in Cell and Developmental Biology. ISSN 2296-634X. 6. doi: 10.3389/fcell.2018.00073. Fulltekst i vitenarkiv
-
Rogne, Marie; Chu, Dinh Toi; Küntziger, Thomas M.; Mylonakou, Maria-Niki; Collas, Philippe & Tasken, Kjetil (2018). OPA1-anchored PKA phosphorylates perilipin 1 on S522 and S497 in adipocytes differentiated from human adipose stem cells. Molecular Biology of the Cell. ISSN 1059-1524. 29(12), s. 1487–1501. doi: 10.1091/mbc.E17-09-0538. Fulltekst i vitenarkiv
-
Briand, Nolwenn; Guénantin, Anne-Claire; Jeziorowska, Dorota; Shah, Akshay; Mantecon, Matthieu & Capel, Emilie [Vis alle 12 forfattere av denne artikkelen] (2018). The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks. Human Molecular Genetics. ISSN 0964-6906. 27(8), s. 1447–1459. doi: 10.1093/hmg/ddy055.
-
Udugama, Maheshi; Sanij, Elaine; Voon, Hsiao P.J.; Son, Jinbae; Hii, Linda & Henson, Jeremy D. [Vis alle 15 forfattere av denne artikkelen] (2018). Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers. Proceedings of the National Academy of Sciences of the United States of America. ISSN 0027-8424. 115(18), s. 4737–4742. doi: 10.1073/pnas.1720391115. Fulltekst i vitenarkiv
-
Paulsen, Jonas; Liyakat Ali, Tharvesh Moideen & Collas, Philippe (2018). Computational 3D genome modeling using Chrom3D. Nature Protocols. ISSN 1754-2189. 13(5), s. 1137–1152. doi: 10.1038/nprot.2018.009.
-
Briand, Nolwenn & Collas, Philippe (2018). Laminopathy-causing lamin A mutations reconfigure lamina-associated domains and local spatial chromatin conformation. Nucleus. ISSN 1949-1034. 9(1), s. 216–226. doi: 10.1080/19491034.2018.1449498. Fulltekst i vitenarkiv
-
La Cour Poulsen, Lars; Edelmann, Reidunn Jetne; Krüger, Stig; Diéguez-Hurtado, Rodrigo; Shah, Akshay & Stav-Noraas, Tor Espen [Vis alle 22 forfattere av denne artikkelen] (2018). Inhibition of endothelial NOTCH1 signaling attenuates inflammation by reducing cytokine-mediated histone acetylation at inflammatory enhancers . Arteriosclerosis, Thrombosis and Vascular Biology. ISSN 1079-5642. 38(4), s. 854–869. doi: 10.1161/ATVBAHA.117.310388. Fulltekst i vitenarkiv
-
Meier, Michael; Grant, Jenny; Dowdle, Amy; Thomas, Armarni; Gerton, Jennifer & Collas, Philippe [Vis alle 8 forfattere av denne artikkelen] (2018). Cohesin facilitates zygotic genome activation in zebrafish. Development. ISSN 0950-1991. 145(1). doi: 10.1242/dev.156521.
-
Zink, Lisa-Maria; Delbarre, Erwan; Eberl, H Christian; Keilhauer, Eva C; Bonisch, Clemens & Punzeler, Sebastian [Vis alle 10 forfattere av denne artikkelen] (2017). H3.Y discriminates between HIRA and DAXX chaperone complexes and reveals unexpected insights into human DAXX-H3.3-H4 binding and deposition requirements. Nucleic Acids Research (NAR). ISSN 0305-1048. 45(10), s. 5691–5706. doi: 10.1093/nar/gkx131. Fulltekst i vitenarkiv
-
Garcia-Nieto, Pablo E; Schwartz, Erin K; King, Devin A; Paulsen, Jonas; Collas, Philippe & Herrera, Rafael E [Vis alle 7 forfattere av denne artikkelen] (2017). Carcinogen susceptibility is regulated by genome architecture and predicts cancer mutagenesis. EMBO Journal. ISSN 0261-4189. 36(19), s. 2829–2843. doi: 10.15252/embj.201796717.
-
Holm, Kristine Lillebø; Syljuåsen, Randi G.; Hasvold, Grete; Alsøe, Lene; Nilsen, Hilde Loge & Ivanauskiene, Kristina [Vis alle 13 forfattere av denne artikkelen] (2017). TLR9 stimulation of B-cells induces transcription of p53 and prevents spontaneous and irradiation-induced cell death independent of DNA damage responses. Implications for Common variable immunodeficiency. PLOS ONE. ISSN 1932-6203. 12(10). doi: 10.1371/journal.pone.0185708. Fulltekst i vitenarkiv
-
Oldenburg, Anja; Briand, Nolwenn; Sørensen, Anita Løvstad; Cahyani, Inswasti; Shah, Akshay & Moskaug, Jan Øivind [Vis alle 7 forfattere av denne artikkelen] (2017). A lipodystrophy-causing lamin A mutant alters conformation and epigenetic regulation of the anti-adipogenic MIR335 locus. Journal of Cell Biology. ISSN 0021-9525. 216(9), s. 2731–2743. doi: 10.1083/jcb.201701043.
-
Guénantin, Anne-Claire; Briand, Nolwenn; Capel, Emilie; Dumont, Florent; Morichon, Romain & Provost, Claire [Vis alle 15 forfattere av denne artikkelen] (2017). Functional human beige adipocytes from induced pluripotent stem cells. Diabetes. ISSN 0012-1797. 66(6), s. 1470–1478. doi: 10.2337/db16-1107.
-
Paulsen, Jonas; Sekelja, Monika; Oldenburg, Anja; Barateau, Alice; Briand, Nolwenn & Delbarre, Erwan [Vis alle 11 forfattere av denne artikkelen] (2017). Chrom3D: Three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts. Genome Biology. ISSN 1465-6906. 18:21, s. 1–15. doi: 10.1186/s13059-016-1146-2.
-
Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle. ISSN 1538-4101. 16(10), s. 947–956. doi: 10.1080/15384101.2017.1310350. Fulltekst i vitenarkiv
-
Delbarre, Erwan; Ivanauskiene, Kristina; Spirkoski, Jane; Shah, Akshay; Vekterud, Kristin & Moskaug, Jan Øivind [Vis alle 10 forfattere av denne artikkelen] (2017). PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX. Genome Research. ISSN 1088-9051. 27(6), s. 913–921. doi: 10.1101/gr.215830.116. Fulltekst i vitenarkiv
-
Voon, Hsiao P.J.; Collas, Philippe & Wong, Lee H. (2016). Compromised telomeric heterochromatin promotes ALTernative lengthening of telomeres. Trends in Cancer. ISSN 2405-8033. 2(3), s. 114–116. doi: 10.1016/j.trecan.2016.02.003.
-
Lindstad, Torstein; Qu, Su; Sikkeland, Jørgen; Jin, Yang; Kristian, Alexandr & Mælandsmo, Gunhild [Vis alle 8 forfattere av denne artikkelen] (2016). STAMP2 is required for human adipose-derived stem cell differentiation and adiposite-facilitated prostrate cancer grown in vivo. OncoTarget. ISSN 1949-2553. 8(54), s. 91817–91827. doi: 10.18632/oncotarget.11131.
-
Collas, Philippe & Oldenburg, Anja (2016). Mapping Nuclear Lamin-Genome Interactions by Chromatin Immunoprecipitation of Nuclear Lamins. Methods in molecular biology. ISSN 1064-3745. s. 315–324. doi: 10.1007/978-1-4939-3530-7_20.
-
Vanhove, Jolien; Pistoni, Mariaelena; Welters, Marc; Eggermont, Kristel; Vanslembrouck, Veerle & Helsen, Nicky [Vis alle 12 forfattere av denne artikkelen] (2016). H3K27me3 Does Not Orchestrate the Expression of Lineage-Specific Markers in hESC-Derived Hepatocytes In Vitro. Stem Cell Reports. ISSN 2213-6711. 7(2), s. 192–206. doi: 10.1016/j.stemcr.2016.06.013.
-
Legartová, Soña; Sehnalová, Petra; Malyšková, Barbora; Küntziger, Thomas M.; Collas, Philippe & Cmarko, Dušan [Vis alle 10 forfattere av denne artikkelen] (2016). Localized Movement and Levels of 53BP1 Protein Are Changed by g-irradiation in PML Deficient Cells. Journal of Cellular Biochemistry. ISSN 0730-2312. 117(11), s. 2583–2596. doi: 10.1002/jcb.25551.
-
Sekelja, Monika; Paulsen, Jonas & Collas, Philippe (2016). 4D nucleomes in single cells: What can computational modeling reveal about spatial chromatin conformation? Genome Biology. ISSN 1465-6906. 17:54. doi: 10.1186/s13059-016-0923-2.
-
Buemo, Carla; Gambini, Andres; Moro, Lucia Natalia; Hiriart, Maria Ines; Fernandez-Martin, Rafael & Collas, Philippe [Vis alle 7 forfattere av denne artikkelen] (2016). Embryo aggregation in pig improves cloning efficiency and embryo quality. PLOS ONE. ISSN 1932-6203. 11(2). doi: 10.1371/journal.pone.0146390.
-
Marstad, Anne; Landsverk, Ole J. B.; Strømme, Olaf; Otterlei, Marit; Collas, Philippe & Sundan, Anders [Vis alle 7 forfattere av denne artikkelen] (2016). A-kinase anchoring protein AKAP95 is a novel regulator of ribosomal RNA synthesis. The FEBS Journal. ISSN 1742-464X. 283(4), s. 757–770. doi: 10.1111/febs.13630.
-
Udugama, Maheshi; Chang, Fiona T.M.; Chan, F. Lyn; Tang, Michelle C.; Pickett, Hilda A. & McGhie, James D.R. [Vis alle 10 forfattere av denne artikkelen] (2015). Histone variant H3.3 provides the heterochromatic H3 lysine 9 tri-methylation mark at telomeres. Nucleic Acids Research (NAR). ISSN 0305-1048. 43(21), s. 10227–10237. doi: 10.1093/nar/gkv847.
-
Rønningen, Torunn; Shah, Akshay; Reiner, Andrew Henry; Collas, Philippe & Moskaug, Jan Øivind (2015). Epigenetic priming of inflammatory response genes by high glucose in adipose progenitor cells. Biochemical and Biophysical Research Communications - BBRC. ISSN 0006-291X. 467(4), s. 979–986. doi: 10.1016/j.bbrc.2015.10.030.
-
Rønningen, Torunn; Shah, Akshay; Oldenburg, Anja; Vekterud, Kristin; Delbarre, Erwan & Moskaug, Jan Øivind [Vis alle 7 forfattere av denne artikkelen] (2015). Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B. Genome Research. ISSN 1088-9051. 25(12), s. 1825–1835. doi: 10.1101/gr.193748.115.
-
Chang, Fiona T.M.; Chan, F. Lyn; McGhie, James D.R.; Udugama, Maheshi; Mayne, Lynne & Collas, Philippe [Vis alle 8 forfattere av denne artikkelen] (2015). CHK1-driven histone H3.3 serine 31 phosphorylation is important for chromatin maintenance and cell survival in human ALT cancer cells. Nucleic Acids Research (NAR). ISSN 0305-1048. 43(5), s. 2603–2614. doi: 10.1093/nar/gkv104.
-
Lund, Eivind Gard; Collas, Philippe & Delbarre, Erwan (2015). Transcription outcome of promoters enriched in histone variant h3.3 defined by positioning of H3.3 and local chromatin marks. Biochemical and Biophysical Research Communications - BBRC. ISSN 0006-291X. 460(2), s. 345–353. doi: 10.1016/j.bbrc.2015.03.037.
-
Taghdouini, Adil El; Sørensen, Anita Løvstad; Reiner, Andrew Henry; Coll, Mar; Verhulst, Stefaan & Mannaerts, Inge [Vis alle 14 forfattere av denne artikkelen] (2015). Genome-wide analysis of DNA methylation and gene Expression patterns in purified, uncultures human liver cells and activated hepatic stellate cells. OncoTarget. ISSN 1949-2553. 6(29), s. 26729–26745. doi: 10.18632/oncotarget.4925. Fulltekst i vitenarkiv
-
Paulsen, Jonas; Gramstad, Odin & Collas, Philippe (2015). Manifold Based Optimization for Single-Cell 3D Genome Reconstruction. PLoS Computational Biology. ISSN 1553-734X. 11(8). doi: 10.1371/journal.pcbi.1004396. Fulltekst i vitenarkiv
-
Lund, Eivind Gard; Duband-Goulet, Isabelle; Oldenburg, Anja; Buendia, Brigitte & Collas, Philippe (2015). Distinct features of lamin A-interacting chromatin domains mapped by Chip-sequencing from sonicated or micrococcal nuclease-digested chromatin. Nucleus. ISSN 1949-1034. 6(1), s. 30–39. doi: 10.4161/19491034.2014.990855.
-
Reppe, Sjur; Noer, Agate; Grimholt, Runa Marie; Halldorsson, Bjarni V; Medina-Gomez, Carolina & Gautvik, Vigdis Teig [Vis alle 16 forfattere av denne artikkelen] (2015). Methylation of bone SOST, its mRNA, and serum sclerostin levels correlate strongly with fracture risk in postmenopausal women. Journal of Bone and Mineral Research. ISSN 0884-0431. 30(2), s. 249–256. doi: 10.1002/jbmr.2342.
-
El Taghdouini, A.; Sørensen, A. L.; Coll, M.; Mannaerts, I.; Øie, Cristina Ionica & Fretland, Å. A. [Vis alle 14 forfattere av denne artikkelen] (2014). P605 gene expression and dna methylation profiling of distinct adult human liver cells and culture-activated hepatic stellate cells. Journal of Hepatology. ISSN 0168-8278. 60(1), s. 271–271. doi: 10.1016/s0168-8278(14)60767-4.
-
Vadrot, Nathalie; Duband-Goulet, Isabelle; Cabet, Eva; Attanda, Wikayatou; Barateau, Alice & Vicart, Patrick [Vis alle 13 forfattere av denne artikkelen] (2014). The p.R482W substitution in a-type lamins deregulates SREBP1 activity in dunnigan-type familial partial lipodystrophy. Human Molecular Genetics. ISSN 0964-6906. 24(7), s. 2096–2109. doi: 10.1093/hmg/ddu728.
-
Carriere, Audrey; Jeanson, Yannick; Berger-Muller, Sandra; André, Mireille; Chenouard, Vanessa & Arnaud, Emmanuelle [Vis alle 17 forfattere av denne artikkelen] (2014). Browning of white adipose cells by Intermediate metabolites: an adaptive mechanism to alleviate redox pressure. Diabetes. ISSN 0012-1797. 63(10), s. 3253–3265. doi: 10.2337/db13-1885.
-
Shah, Akshay; Oldenburg, Anja & Collas, Philippe (2014). A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules. BMC Genomics. ISSN 1471-2164. 15(1). doi: 10.1186/1471-2164-15-1186.
-
Lund, Eivind Gard; Ruppelt, Anja & Collas, Philippe (2014). Enriched domain detector: A program for detection of wide genomic enrichment domains robust against local variations. Nucleic Acids Research (NAR). ISSN 0305-1048. 42(11). doi: 10.1093/nar/gku324.
-
Ivanauskiene, Kristina; Delbarre, Erwan; McGhie, James; Küntziger, Thomas Michel; Wong, Lee-Jun C. & Collas, Philippe (2014). The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity. Genome Research. ISSN 1088-9051. 24(10), s. 1584–1594. doi: 10.1101/gr.173831.114.
-
Østrup, Olga; Reiner, Andrew Henry; Alestrøm, Peter & Collas, Philippe (2014). The specific alteration of histone methylation profiles by DZNep during early zebrafish development. Biochimica et Biophysica Acta. ISSN 0006-3002. 1839(11), s. 1307–1315. doi: 10.1016/j.bbagrm.2014.09.013.
-
Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan & Collas, Philippe [Vis alle 8 forfattere av denne artikkelen] (2014). Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. PLOS ONE. ISSN 1932-6203. 9(2). doi: 10.1371/journal.pone.0089158.
-
Collas, Philippe; Lund, Eivind Gard & Ruppelt, Anja (2014). Closing the (nuclear) envelope on the genome: How nuclear lamins interact with promoters and modulate gene expression. Bioessays. ISSN 0265-9247. 36(1), s. 75–83. doi: 10.1002/bies.201300138.
-
Oldenburg Ruppelt, Anja; Delbarre, Erwan; Thiede, Bernd; Vigouroux, Corinne & Collas, Philippe (2014). Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Human Molecular Genetics. ISSN 0964-6906. 23(5), s. 1151–1162. doi: 10.1093/hmg/ddt509.
-
Boulland, Jean-Luc; Mastrangelopoulou, Maria; Boqest, Andrew Craig; Jakobsen, Rune Bruhn; Noer, Agate & Glover, Joel [Vis alle 7 forfattere av denne artikkelen] (2013). Epigenetic Regulation of Nestin Expression during Neurogenic Differentiation of Adipose Tissue Stem Cells. Stem Cells and Development. ISSN 1547-3287. 22(7), s. 1042–1052. doi: 10.1089/scd.2012.0560.
-
Østrup, Olga; Andersen, Ingrid Stavenes & Collas, Philippe (2013). Chromatin-linked determinants of zygotic genome activation. Cellular and Molecular Life Sciences (CMLS). ISSN 1420-682X. 70(8), s. 1425–1437. doi: 10.1007/s00018-012-1143-x.
-
Lund, Eivind Gard & Collas, Philippe (2013). Nuclear lamins Making contacts with promoters. Nucleus. ISSN 1949-1034. 4(6), s. 424–430. doi: 10.4161/nucl.26865.
-
Aanes, Håvard; Collas, Philippe & Alestrøm, Peter (2013). Transcriptome dynamics and diversity in the early zebrafish embryo. Briefings in Functional Genomics & Proteomics. ISSN 1473-9550. doi: 10.1093/bfgp/elt049.
-
Østrup, Olga; Olbricht, Gayla; Østrup, Esben; Hyttel, Poul; Collas, Philippe & Cabot, Ryan (2013). RNA Profiles of Porcine Embryos during Genome Activation Reveal Complex Metabolic Switch Sensitive to In Vitro Conditions. PLOS ONE. ISSN 1932-6203. 8(4). doi: 10.1371/journal.pone.0061547.
-
Lund, Eivind Gard; Oldenburg Ruppelt, Anja; Delbarre, Erwan; Freberg, Christel Taranger; Duband-Goulet, Isabelle & Eskeland, Ragnhild [Vis alle 8 forfattere av denne artikkelen] (2013). Lamin A/C-promoter interactions specify chromatin state-dependent transcription outcomes. Genome Research. ISSN 1088-9051. 23(10), s. 1580–1589. doi: 10.1101/gr.159400.113.
-
Hemmingsen, Mette; Vedel, Søren; Skafte-Pedersen, Peder; Sabourin, David; Collas, Philippe & Bruus, Henrik [Vis alle 7 forfattere av denne artikkelen] (2013). The Role of Paracrine and Autocrine Signaling in the Early Phase of Adipogenic Differentiation of Adiposederived Stem Cells. PLOS ONE. ISSN 1932-6203. 8(5). doi: 10.1371/journal.pone.0063638.
-
Herlofsen, Sarah; Bryne, Jan Christian; Høiby, Torill; Wang, Li; Issner, Robbyn & Zhang, XL [Vis alle 13 forfattere av denne artikkelen] (2013). Genome-wide map of quantified epigenetic changes during in vitro chondrogenic differentiation of primary human mesenchymal stem cells. BMC Genomics. ISSN 1471-2164. 14. doi: 10.1186/1471-2164-14-105.
-
Aanes, Håvard; Østrup, Olga; Andersen, Ingrid Stavenes; Moen, Lars Fredrik; Mathavan, Sinnakaruppan & Collas, Philippe [Vis alle 7 forfattere av denne artikkelen] (2013). Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish. BMC Genomics. ISSN 1471-2164. 14. doi: 10.1186/1471-2164-14-331.
-
Andersen, Ingrid Stavenes; Lindeman, Leif Christopher; Reiner, Andrew Henry; Østrup, Olga; Aanes, Håvard & Alestrøm, Peter [Vis alle 7 forfattere av denne artikkelen] (2013). Epigenetic Marking of the Zebrafish Developmental Program. Current Topics in Developmental Biology. ISSN 0070-2153. 104, s. 85–112. doi: 10.1016/B978-0-12-416027-9.00003-6.
-
Collas, Philippe & Eskeland, Ragnhild (2013). Oslo Epigenetics Symposium 2012 Oslo, Norway, 8-9 November 2012. Epigenomics. ISSN 1750-1911. 5(1), s. 29–32. doi: 10.2217/EPI.12.76.
-
Herrmann, Doris; Dahl, John Arne; Lucas-Hahn, Andrea; Collas, Philippe & Niemann, Heiner (2013). Histone modifications and mRNA expression in the inner cell mass and trophectoderm of bovine blastocysts. Epigenetics. ISSN 1559-2294. 8(3), s. 281–289. doi: 10.4161/epi.23899.
-
Delbarre, Erwan; Ivanauskiene, Kristina; Küntziger, Thomas Michel & Collas, Philippe (2013). DAXX-dependent supply of soluble (H3.3-H4) dimers to PML bodies pending deposition into chromatin. Genome Research. ISSN 1088-9051. 23(3), s. 440–451. doi: 10.1101/gr.142703.112.
-
Andersen, Ingrid; Reiner, Andrew Henry; Aanes, Håvard; Alestrøm, Peter & Collas, Philippe (2012). Developmental features of DNA methylation during activation of the embryonic zebrafish genome. Genome Biology. ISSN 1465-6906. 13. doi: 10.1186/gb-2012-13-7-r65.
-
Andersen, Ingrid Stavenes; Østrup, Olga; Lindeman, Leif Christopher; Aanes, Håvard; Reiner, Andrew Henry & Mathavan, Sinnakaruppan [Vis alle 8 forfattere av denne artikkelen] (2012). Epigenetic complexity during the zebrafish mid-blastula transition. Biochemical and Biophysical Research Communications - BBRC. ISSN 0006-291X. 417(4), s. 1139–1144. doi: 10.1016/j.bbrc.2011.12.077.
-
Boqest, Andrew Craig & Collas, Philippe (2012). Obtaining freshly isolated and cultured mesenchymal stem cells from human adipose tissue. I Andrew J. W., Orry & Ruben, Abagyan (Red.), Methods in Molecular Biology. Humana Press. ISSN 1064-3745. s. 269–278. doi: 10.1007/978-1-61779-815-3_15.
-
Lindeman, Leif Christopher; Andersen, Ingrid Stavenes; Reiner, Andrew Henry; Li, N; Aanes, Håvard & Østrup, Olga [Vis alle 11 forfattere av denne artikkelen] (2011). Prepatterning of developmental gene expression by modified histones before zygotic genome activation. Developmental Cell. ISSN 1534-5807. s. 993–1004. doi: 10.1016/j.devcel.2011.10.008.
-
Collas, Philippe (2011). Notice of redundant publication. Nuclear reprogramming in cell-free extracts. Philosophical Transactions of the Royal Society of London. Biological Sciences. ISSN 0962-8436. 366. doi: 10.1098/rstb.2011.0257.
-
Collas, Philippe (2011). A chromatin immunoprecipitation protocol for small cell numbers. Methods in molecular biology. ISSN 1064-3745. 791, s. 179–193. doi: 10.1007/978-1-61779-316-5_14.
-
Paulsen, Jonas & Collas, Philippe (2022). Modeling the 3D Genome Using Hi-C and Nuclear Lamin-Genome Contacts. I Bicciato, Silvio & Ferrari, Francesco (Red.), Hi-C Data Analysis Methods and Protocols. Humana Press. ISSN 978-1-0716-1390-0. s. 337–352. doi: 10.1007/978-1-0716-1390-0_18.
-
Collas, Philippe; Mosbaha, Helena; Akinci, Baris; Araújo-Vilar, David; Tudela, Juan Carrion & Ceccarinif, Giovanni [Vis alle 29 forfattere av denne artikkelen] (2022). Proceedings of the annual meeting of the European Consortium of Lipodystrophies (ECLip) Cambridge, UK, 7–8 April 2022.
-
López-Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle. ISSN 1538-4101. 16(10), s. 947–956. doi: 10.1080/15384101.2017.1310350..
-
Lopez Soop, Graciela; Reiner, Andrew Henry; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas Michel (2015). Regulation of Normal Mitotic Progression by A-kinase Anchoring Protein 95 (AKAP95).
-
Küntziger, Thomas Michel; Lund, Eivind Gard & Collas, Philippe (2013). Signal molecules anchoring at proliferation and differentiation genes by A-Kinase Anchoring Protein (AKAP) 95.
-
Ivanauskiene, Kristina; Delbarre, Erwan; Küntziger, Thomas Michel & Collas, Philippe (2012). DAXX-dependent recruitment of histone variant H3.3 to PML bodies before deposition into chromatin. The FEBS Journal. ISSN 1742-464X. 279, s. 505–505.
-
Rønningen, torunn; Collas, Philippe & Moskaug, Jan Øivind (2012). Obesity associated growth factors and elevated glucose regulates expression of inflammation regulatory genes in human adipose derived mesenchymal stem cells.
-
Küntziger, Thomas Michel; Lund, Eivind Gard & Collas, Philippe (2012). Signal molecules anchoring at proliferation and differentiation genes by A-Kinase Anchoring Protein (AKAP) 95.
-
Collas, Philippe; Delbarre, Erwan; Küntziger, Thomas Michel; Lund, Eivind Gard; Ruppelt, Anja & Reiner, Andrew Henry [Vis alle 7 forfattere av denne artikkelen] (2012). Epigenetic programming of stromal cell fate. International Journal of Molecular Medicine. ISSN 1107-3756. 30, s. S57–S57.
-
Andersen, Ingrid Stavenes & Collas, Philippe (2011). Promoter DNA methylation profiling by MeDIP-chip during the mid-blastula transition.
Publisert
13. apr. 2011 10:35
- Sist endret
27. apr. 2021 16:27