Junbai Wang

1. Spin anisotropy for Excitation in Collisions between Two One-Electron atoms,
J. B. Wang , J. P. Hansen and A. Dubois
Physical Review Letters, 85, 1638, 2000

2. Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study,
Junbai Wang , Jan Delabie, Hans Christian Aasheim, Erlend Smeland and Ola Myklebost,
BMC Bioinformatics, 3, 36, 2002

3. MGraph: Graphical models for microarray data analysis,
Junbai Wang, Ola Myklebost and Eivind Hovig
Bioinformatics, Vol. 19 no. 17, 2210, 2003

4. New probabilistic graphical models for genetic regulatory networks studies
Junbai Wang, Leo Wang-kit Cheung and Jan Delabie.
Journal of Biomedical Informatics. Vol. 38/6 pp 443-455 2005

5. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster
Moorman C*, Sun LV*, Wang JB*, Wit ED, Ward L, Lu XJ,Talhout W, Greil F, White KP, Bussemaker HJ and Steensel van B.
Proc. Natl. Acad. Sci. U S A. vol. 103| no.32| 12027-12032, August 8, 2006. (* co-first authors)

6. A new framework for identifying combinatorial regulation of transcription factors: a case study of the yeast cell cycle.
Junbai Wang.
Journal of Biomedical Informatics. Vol 40/6 pp 707-725, 2007.

7. BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors.
Junbai Wang, Morigen.
BMC Bioinformatics. 2009, 10:345.

8. Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation.
Wang J, Lan X, Hsu PY, Hsu HK, Huang K, Parvin J, Huang TH, Jin VX.
BMC Genomics. 2013 Jan 31;14(1):70.

9. Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation
Junbai Wang, Agnieszka Malecka, Gunhild Tr?d Jan Delabie
BMC Genomics 2015, 16(Suppl 7):S12.

10. BayesPI-BAR: a new biophysical model for characterization of regulatory sequence variations
Junbai Wang and Kirill Batmanov
Nucleic Acids Research 2015, July

11. Integrative whole-genome sequence analysis reveals roles of regulatory mutations in BCL6 and BCL2 in follicular lymphoma.
Batmanov K, Wang W, Bjoras M, elabie J, Wang J.
Sci Rep. 2017 Aug 1;7(1):7040. doi: 10.1038/s41598-017-07226-4.

12. Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance.
Zhou, Y*., Gerrard, D.L.*, Wang, JB., Li, T., Yang, Y., Fritz, A.J., Rajendran, M., Fu, X., Schiff, R., Lin, S., Frietze, S., Jin, V.X.
Nat Commun. 2019 Apr 3;10(1):1522. (* co-first authors)

13. IGAP-integrative genome analysis pipeline reveals new gene regulatory model associated with nonspecific TF-DNA binding affinity.
AS Naeini, A. Farooq, M. Bjoras and JB Wang .
Computational and Structural Biotechnology Journal. 2020 June 2.

14. Integrating whole genome sequencing, methylation, gene expression, topological associated domain information in regulatory mutation prediction: a study of follicular lymphoma.
Amna Farooq, Gunhild Trøen, Jan Delabie, Junbai Wang.
Computational and Structural Biotechnology Journal. 2022 March.

15. Identifying Functional Regulatory Mutation Blocks by Integrating Genome Sequencing and Transcriptome Data
Mingyi Yang, Omer Ali, Magnar Bjørås, Junbai Wang.
iScience. 2023 July 2.

• yao, zhihao; jin, suoqin; zhou, fuling; Wang, Junbai; wang, kai & zou, xiufen (2024). A novel multiscale framework for delineating cancer evolution from subclonal compositions. Journal of Theoretical Biology. ISSN 0022-5193. 582. doi: 10.1016/j.jtbi.2024.111743.
• Yang, Mingyi; Ali, Omer; Bjørås, Magnar & Wang, Junbai (2023). Identifying functional regulatory mutation blocks by integrating genome sequencing and transcriptome data. iScience. ISSN 2589-0042. 26(8), s. 1–23. doi: 10.1016/j.isci.2023.107266. Fulltekst i vitenarkiv
• Fang, Kun; Wang, Junbai; Liu, Lu & Jin, Victor X. (2022). Mapping nucleosome and chromatin architectures: A survey of computational methods. Computational and Structural Biotechnology Journal. ISSN 2001-0370. 20, s. 3955–3962. doi: 10.1016/j.csbj.2022.07.037. Fulltekst i vitenarkiv
• Farooq, Amna; Trøen, Gunhild; Delabie, Jan & Wang, Junbai (2022). Integrating whole genome sequencing, methylation, gene expression, topologically associated domain information in regulatory mutation prediction: A study of follicular lymphoma. Computational and Structural Biotechnology Journal. ISSN 2001-0370. 20, s. 1726–1742. doi: 10.1016/j.csbj.2022.03.023. Fulltekst i vitenarkiv
• Ali, Omer; Farooq, Amna; Yang, Mingyi; Jin, Victor X.; Bjørås, Magnar & Wang, Junbai (2022). abc4pwm: affinity based clustering for position weight matrices in applications of DNA sequence analysis. BMC Bioinformatics. ISSN 1471-2105. 23(1). doi: 10.1186/s12859-022-04615-z. Fulltekst i vitenarkiv Vis sammendrag

  Background Transcription factor (TF) binding motifs are identified by high throughput sequencing technologies as means to capture Protein-DNA interactions. These motifs are often represented by consensus sequences in form of position weight matrices (PWMs). With ever-increasing pool of TF binding motifs from multiple sources, redundancy issues are difficult to avoid, especially when every source maintains its own database for collection. One solution can be to cluster biologically relevant or similar PWMs, whether coming from experimental detection or in silico predictions. However, there is a lack of efficient tools to cluster PWMs. Assessing quality of PWM clusters is yet another challenge. Therefore, new methods and tools are required to efficiently cluster PWMs and assess quality of clusters. Results A new Python package Affinity Based Clustering for Position Weight Matrices (abc4pwm) was developed. It efficiently clustered PWMs from multiple sources with or without using DNA-Binding Domain (DBD) information, generated a representative motif for each cluster, evaluated the clustering quality automatically, and filtered out incorrectly clustered PWMs. Additionally, it was able to update human DBD family database automatically, classified known human TF PWMs to the respective DBD family, and performed TF motif searching and motif discovery by a new ensemble learning approach. Conclusion This work demonstrates applications of abc4pwm in the DNA sequence analysis for various high throughput sequencing data using ~ 1770 human TF PWMs. It recovered known TF motifs at gene promoters based on gene expression profiles (RNA-seq) and identified true TF binding targets for motifs predicted from ChIP-seq experiments. Abc4pwm is a useful tool for TF motif searching, clustering, quality assessment and integration in multiple types of sequence data analysis including RNA-seq, ChIP-seq and ATAC-seq.

• Li, Jingwei; Fang, Kun; Choppavarapu, Lavanya; Yang, Ke; Yang, Yini & Wang, Junbai [Vis alle 9 forfattere av denne artikkelen] (2021). Hi-C profiling of cancer spheroids identifies 3D-growth-specific chromatin interactions in breast cancer endocrine resistance. Clinical Epigenetics. ISSN 1868-7075. 13(175). doi: 10.1186/s13148-021-01167-6.
• Gatti, Francesca; Mia, Sobuj; Hammarström, Clara Louise; Frerker, Nadine; Fosby, Bjarte & Wang, Junbai [Vis alle 11 forfattere av denne artikkelen] (2021). Nuclear IL-33 restrains the early conversion of fibroblasts to an extracellular matrix-secreting phenotype. Scientific Reports. ISSN 2045-2322. 11:108(1), s. 1–13. doi: 10.1038/s41598-020-80509-5. Fulltekst i vitenarkiv
• Pihlstrøm, Hege; Ueland, Thor; Michelsen, Annika; Aukrust, Pål; Gatti, Francesca & Hammarström, Clara Louise [Vis alle 15 forfattere av denne artikkelen] (2020). Exploring the potential effect of paricalcitol on markers of inflammation in de novo renal transplant recipients. PLOS ONE. ISSN 1932-6203. 15:e0243759(12), s. 1–14. doi: 10.1371/journal.pone.0243759. Fulltekst i vitenarkiv
• Farooq, Amna; Grønmyr, Sindre; Omer, Ali Avan; Rognes, Torbjørn; Scheffler, Katja & Bjørås, Magnar [Vis alle 7 forfattere av denne artikkelen] (2020). HMST-Seq-Analyzer: A new python tool for differential methylation and hydroxymethylation analysis in various DNA methylation sequencing data. Computational and Structural Biotechnology Journal. ISSN 2001-0370. 18, s. 2877–2889. doi: 10.1016/j.csbj.2020.09.038. Fulltekst i vitenarkiv
• Yang, Yini; Choppavarapu, Lavanya; Fang, Kun; Naeini, Alireza Sahaf; Nosirov, Bakhtiyor & Li, Jingwei [Vis alle 14 forfattere av denne artikkelen] (2020). The 3D genomic landscape of differential response to EGFR/HER2 inhibition in endocrine-resistant breast cancer cells. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. ISSN 1874-9399. 1863(11). doi: 10.1016/j.bbagrm.2020.194631.
• Zhou, Yufan; Cheng, Xiaolong; Yang, Yini; Li, Tian; Li, Jingwei & Huang, Tim H.-M. [Vis alle 9 forfattere av denne artikkelen] (2020). Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops. Genome Medicine. ISSN 1756-994X. 12(12). doi: 10.1186/s13073-020-00769-8.
• Naeini, Alireza Sahaf; Farooq, Amna; Bjørås, Magnar & Wang, Junbai (2020). IGAP-integrative genome analysis pipeline reveals new gene regulatory model associated with nonspecific TF-DNA binding affinity. Computational and Structural Biotechnology Journal. ISSN 2001-0370. 18, s. 1270–1286. doi: 10.1016/j.csbj.2020.05.024.
• Zhou, Yufan; Gerrard, Diana L; Wang, Junbai; li, tian; Yang, Yini & Fritz, Andrew J [Vis alle 12 forfattere av denne artikkelen] (2019). Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance. Nature Communications. ISSN 2041-1723. 10(1). doi: 10.1038/s41467-019-09320-9.
• Batmanov, Kirill; Delabie, Jan & Wang, Junbai (2019). BayesPI-BAR2: A New Python Package for Predicting Functional Non-coding Mutations in Cancer Patient Cohorts. Frontiers in Genetics. ISSN 1664-8021. 10, s. 1–8. doi: 10.3389/fgene.2019.00282.
• Gerrard, DL; Wang, Y; Gaddis, M; Zhou, Y; Wang, Junbai & witt, H [Vis alle 10 forfattere av denne artikkelen] (2018). Three-dimensional analysis reveals altered chromatin interaction by enhancer inhibitors harbors TCF7L2-regulated cancer gene signature. Journal of Cellular Biochemistry. ISSN 0730-2312. 120(3), s. 3056–3070. doi: 10.1002/jcb.27449.
• La Cour Poulsen, Lars; Edelmann, Reidunn Jetne; Krüger, Stig; Diéguez-Hurtado, Rodrigo; Shah, Akshay & Stav-Noraas, Tor Espen [Vis alle 22 forfattere av denne artikkelen] (2018). Inhibition of endothelial NOTCH1 signaling attenuates inflammation by reducing cytokine-mediated histone acetylation at inflammatory enhancers . Arteriosclerosis, Thrombosis and Vascular Biology. ISSN 1079-5642. 38(4), s. 854–869. doi: 10.1161/ATVBAHA.117.310388. Fulltekst i vitenarkiv
• Malecka, Agnieszka Maria; Trøen, Gunhild; Tierens, Anne; Østlie, Ingunn; Malecki, Jedrzej Mieczyslaw & Randen, Ulla [Vis alle 10 forfattere av denne artikkelen] (2017). Frequent somatic mutations of KMT2D (MLL2) and CARD11 genes in primary cold agglutinin disease. British Journal of Haematology. ISSN 0007-1048. 183(5), s. 838–842. doi: 10.1111/bjh.15063.
• Batmanov, Kirill & Wang, Junbai (2017). Predicting Variation of DNA Shape Preferences in Protein-DNA Interaction in Cancer Cells with a New Biophysical Model. Genes. ISSN 2073-4425. 8(9). doi: 10.3390/genes8090233.
• Batmanov, Kirill; Wang, Wei; Bjørås, Magnar; Delabie, Jan & Wang, Junbai (2017). Integrative whole-genome sequence analysis reveals roles of regulatory mutations in BCL6 and BCL2 in follicular lymphoma. Scientific Reports. ISSN 2045-2322. 7(1). doi: 10.1038/s41598-017-07226-4. Fulltekst i vitenarkiv
• Li, Xiaoran; Lu, Jie; Kan, Quancheng; Li, Xiaoli; Fan, Qiong & Li, Yaqing [Vis alle 17 forfattere av denne artikkelen] (2017). Metabolic reprogramming is associated with flavopiridol resistance in prostate cancer DU145 cells. Scientific Reports. ISSN 2045-2322. 7:5081, s. 1–20. doi: 10.1038/s41598-017-05086-6.
• Pihlstrøm, Hege; Gatti, Francesca; Hammarström, Clara Louise; Eide, Ivar Anders; Kasprzycka, Monika & Wang, Junbai [Vis alle 13 forfattere av denne artikkelen] (2017). Early introduction of oral paricalcitol in renal transplant recipients. An open-label randomized study. Transplant International. ISSN 0934-0874. 30(8), s. 827–840. doi: 10.1111/tri.12973.
• Olsen, Maria Belland; Hildrestrand, Gunn Annette; Scheffler, Katja; Vinge, Leif Erik; Alfsnes, Katrine & Palibrk, Vuk [Vis alle 29 forfattere av denne artikkelen] (2017). NEIL3-Dependent Regulation of Cardiac Fibroblast Proliferation Prevents Myocardial Rupture. Cell reports. ISSN 2211-1247. 18, s. 82–92. doi: 10.1016/j.celrep.2016.12.009. Fulltekst i vitenarkiv
• Wang, Junbai; Wu, Qianqian; Hu, Xiaohua Tony & Tian, Tianhai (2016). An integrated approach to infer dynamic protein-gene interactions – A case study of the human P53 protein. Methods. ISSN 1046-2023. 110, s. 3–13. doi: 10.1016/j.ymeth.2016.08.001.
• Li, Xiaoran; Zhong, Yali; Lu, Jie; Axcrona, Karol; Eide, Lars & Syljuåsen, Randi G. [Vis alle 13 forfattere av denne artikkelen] (2016). MtDNA depleted PC3 cells exhibit Warburg effect and cancer stem cell features. OncoTarget. ISSN 1949-2553. 7(26), s. 40297–40313. doi: 10.18632/oncotarget.9610. Fulltekst i vitenarkiv
• Huang, Ruixia; Wang, Junbai; Zhong, Yali; Liu, Yishan; Stokke, Trond & Tropé, Claes Gøran [Vis alle 8 forfattere av denne artikkelen] (2015). Mitochondrial DNA deficiency in ovarian cancer cells and cancer stem cell-like properties. Anticancer Research. ISSN 0250-7005. 35(7), s. 3743–3754.
• Wang, Junbai & Batmanov, Kirill (2015). BayesPI-BAR: a new biophysical model for characterization of regulatory sequence variations. Nucleic Acids Research (NAR). ISSN 0305-1048. 43:e147(21), s. 1–13. doi: 10.1093/nar/gkv733.
• Wang, Junbai; Malecka, Agnieszka Maria; Trøen, Gunhild & Delabie, Jan (2015). Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation. BMC Genomics. ISSN 1471-2164. 16(Suppl7:S12), s. 1–15. doi: 10.1186/1471-2164-16-S7-S12.
• Tangen, Jon-Magnus; Tierens, Anne; Caers, Jo; Binsfeld, Marilene; Olstad, Ole Kristoffer & Siebke, Anne-Marie [Vis alle 9 forfattere av denne artikkelen] (2015). Immunomodulatory Effects of the Agaricus blazei Murrill-Based Mushroom Extract AndoSan in Patients with Multiple Myeloma Undergoing High Dose Chemotherapy and Autologous Stem Cell Transplantation: A Randomized, Double Blinded Clinical Study. BioMed Research International. ISSN 2314-6133. doi: 10.1155/2015/718539.
• Wang, Junbai (2014). Quality versus accuracy: result of a reanalysis of protein-binding microarrays from the DREAM5 challenge by using BayesPI2 including dinucleotide interdependence. BMC Bioinformatics. ISSN 1471-2105. 15(289). doi: 10.1186/1471-2105-15-289.
• Ward, Lucas D.; Wang, Junbai & Bussemaker, Harmen J. (2014). Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast. BMC Genomics. ISSN 1471-2164. 15(1). doi: 10.1186/1471-2164-15-494.
• Pollheimer, Jürgen; Bodin, Johanna; Sundnes, Olav; Bekkeheien, Reidunn C; Skånland, Sigrid Strand & Sponheim, Jon [Vis alle 16 forfattere av denne artikkelen] (2013). Interleukin-33 drives a proinflammatory endothelial activation that selectively targets nonquiescent cells. Arteriosclerosis, Thrombosis and Vascular Biology. ISSN 1079-5642. 33(2), s. e47–e55. doi: 10.1161/ATVBAHA.112.253427.
• Wang, Junbai; Lan, Xun; Hsu, Pei-Yin; Hsu, Hang-Kai; Huang, Kun & Parvin, Jeffrey [Vis alle 8 forfattere av denne artikkelen] (2013). Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation. BMC Genomics. ISSN 1471-2164. 14. doi: 10.1186/1471-2164-14-70.
• Warsam, Abdirashid Ali; Delabie, Jan; Malecka, Agnieszka Maria; Wang, Junbai; Trøen, Gunhild & Tierens, Anne (2012). Monocytoid B cells: An Enigmatic B cell Subset Showing Evidence of Extrafollicular Immunoglobulin gene Somatic Hypermutation. Scandinavian Journal of Immunology. ISSN 0300-9475. 75(5), s. 500–509. doi: 10.1111/j.1365-3083.2012.02688.x.
• Kim, Geoffrey; Davidson, Ben; Henning, Ryan; Wang, Junbai; Yu, Minshu & Annunziata, Christina [Vis alle 8 forfattere av denne artikkelen] (2012). Adhesion molecule protein signature in ovarian cancer effusions is prognostic of patient outcome. Cancer. ISSN 0008-543X. 118(6), s. 1543–1553. doi: 10.1002/cncr.26449.
• Wang, Junbai & Tian, Tianhai (2012). Effective Non-linear Methods for Inferring Genetic Regulation from Time-Series Microarray Gene Expression Data. Methods in molecular biology. ISSN 1064-3745. 802, s. 235–246. doi: 10.1007/978-1-61779-400-1_15.
• Gillet, Jean-Pierre; Wang, Junbai; Calcagno, Anna Maria; Green, Lisa J.; Varma, Sudhir & Elstrand, Mari Bunkholt [Vis alle 10 forfattere av denne artikkelen] (2011). Clinical relevance of multidrug resistance gene expression in ovarian serous carcinoma effusions. Molecular Pharmaceutics. ISSN 1543-8384. 8(6), s. 2080–2088. doi: 10.1021/mp200240a.
• Lan, Xun; Adams, Christopher J.; Landers, Mark; Dudas, Miroslav; Krissinger, Daniel & Marnellos, George [Vis alle 12 forfattere av denne artikkelen] (2011). High Resolution Detection and Analysis of CpG Dinucleotides Methylation Using MBD-Seq Technology. PLOS ONE. ISSN 1932-6203. 6(7). doi: 10.1371/journal.pone.0022226.
• Wang, Junbai (2011). Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information. BMC Genomics. ISSN 1471-2164. 12. doi: 10.1186/1471-2164-12-172.
• Wang, Junbai (2010). The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based high-throughput data. BMC Bioinformatics. ISSN 1471-2105. 11. doi: 10.1186/1471-2105-11-412.
• Tierens, Anne; Holte, Harald; Warsam, Abdirashid Ali; Ikonomou, Ida Merete Münster; Wang, Junbai & Chan, Wing C [Vis alle 7 forfattere av denne artikkelen] (2010). Low levels of monoclonal small B cells in the bone marrow of patients with diffuse large B-cell lymphoma of activated B-cell type but not of germinal center B-cell type. Haematologica. ISSN 0390-6078. 95(8), s. 1334–1341. doi: 10.3324/haematol.2009.014100.
• Elgaaen, Bente Vilming; Foss, Kari Bente; Wang, Junbai; Olstad, Ole Kristoffer; Fortunati, Dario & Onsrud, Mathias [Vis alle 9 forfattere av denne artikkelen] (2010). POLD2 and KSP37 (FGFBP2) Correlate Strongly with Histology, Stage and Outcome in Ovarian Carcinomas. PLOS ONE. ISSN 1932-6203. 5(11). doi: 10.1371/journal.pone.0013837.
• Wang, Junbai & Tian, Tianhai (2010). Quantitative model for inferring dynamic regulation of the tumour suppressor gene p53. BMC Bioinformatics. ISSN 1471-2105. 11. doi: 10.1186/1471-2105-11-36.
• Wang, Qing; He, Wei; Lu, CD; Wang, Zhihui; Wang, Junbai & Giercksky, Karl-Erik [Vis alle 8 forfattere av denne artikkelen] (2009). Oct3/4 and Sox2 Are Significantly Associated with an Unfavorable Clinical Outcome in Human Esophageal Squamous Cell Carcinoma. Anticancer Research. ISSN 0250-7005. 29(4), s. 1233–1241.
• Wang, Junbai & Morigen, M. (2009). BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors. BMC Bioinformatics. ISSN 1471-2105. 10. doi: 10.1186/1471-2105-10-345.
• Wang, Junbai (2008). Computational biology of genome expression and regulation - A review of microarray bioinformatics. Journal of Environmental Pathology And Toxicology. ISSN 0731-8898. 27(3), s. 157–179.
• Wang, Junbai (2007). A new framework for identifying combinatorial regulation of transcription factors: a case study of the yeast cell cycle. Journal of Biomedical Informatics. ISSN 1532-0464. doi: 10.1016/j.jbi.2007.02.003.
• Berner, Jeanne-Marie; Muller, Christoph Rainer; Holden, Marit; Wang, Junbai; Hovig, Eivind & Myklebost, Ola (2006). Sampling effects on gene expression data from a human tumour xenograft. Scandinavian Journal of Laboratory Animal Science. ISSN 0901-3393. 33, s. 17–34.
• Meza-Zepeda, L. A.; Kresse, Stine Henrichson; Barragan-Polania, AH; Bjerkehagen, Bodil; Ohnstad, Hege Oma & Namløs, Heidi Maria [Vis alle 9 forfattere av denne artikkelen] (2006). Array comparative genomic hybridization reveals distinct DNA copy number differences between gastrointestinal stromal tumors and leiomyosarcomas. Cancer Research. ISSN 0008-5472. doi: 10.1158/0008-5472.CAN-06-1972.
• Moorman, C; Sun, LV; Wang, Junbai; de wit, E; Ward, LD & Lu, XJ [Vis alle 9 forfattere av denne artikkelen] (2006). Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. ISSN 0027-8424. doi: 10.1073/pnas.0605003103.
• Wang, Junbai; Cheung, Leo Wang-Kit & Delabie, Jan (2005). New probabilistic graphical models for genetic regulatory networks studies. Journal of Biomedical Informatics. ISSN 1532-0464. doi: 10.1016/j.jbi.2005.04.003.
• Hjortland, Geir Olav; Lillehammer, Trine; Somme, Stig; Wang, Junbai; Halvorsen, Thomas & Juell, Siri [Vis alle 9 forfattere av denne artikkelen] (2004). Plasminogen activator inhibitor-1 increases the expression of VEGF in human glioma cells. Experimental Cell Research. ISSN 0014-4827. 294, s. 130–139. doi: 10.1016/j.yexcr.10.013.
• Wang, Junbai; Meza-Zepeda, LA; Kresse, Stine Henrichson & Myklebost, Ola (2004). M-CGH: analysing microarray-based CGH experiments. BMC Bioinformatics. ISSN 1471-2105. doi: 10.1186/1471-2105-5-74.
• Wang, Junbai; Myklebost, Ola & Hovig, Eivind (2003). MGraph: graphical models for microarray data analysis. Bioinformatics. ISSN 1367-4803. 19, s. 2210–2211.
• Wang, Junbai; Myklebost, Ola; Hovig, Eivind; Henriksen, Jørn; Mælandsmo, Gunhild Mari & Lothe, Ragnhild A [Vis alle 14 forfattere av denne artikkelen] (2003). Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data. BMC Bioinformatics. ISSN 1471-2105. 4.
• Tierens, Anne; Delabie, Jan; Malecka, Agnieszka Maria; Wang, Junbai; Gruszka-Westwood, A & Catovsky, D [Vis alle 7 forfattere av denne artikkelen] (2003). Splenic marginal zone lymphoma with villous lymphocytes shows on-going immunoglobulin gene mutations. American Journal of Pathology. ISSN 0002-9440. doi: 10.1016/S0002-9440(10)63862-X.
• Wang, Junbai; Delabie, Jan; Åsheim, Hans-Christian; Smeland, Erlend B. & Myklebost, Ola (2002). Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study. BMC Bioinformatics. ISSN 1471-2105. doi: 10.1186/1471-2105-3-36.
• Wang, Junbai; Delabie, Jan; aasheim, Hans-Christian; Smeland, Erlend B & Myklebost, Ola (2002). Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study. BMC Bioinformatics. ISSN 1471-2105.
• Hansen, JP; Kocbach, Ladislav; Synnes, SA & Wang, Junbai (1998). Origin of the structures in the excitation cross sections in ion-atom collisions, Physical Review A. Atomic, Molecular, and Optical Physics (PRA). ISSN 1050-2947. doi: 10.1103/PhysRevA.57.R4086.

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• Wang, Junbai; Tian, Tianhai & Tan, Aik Choon (2012). Next Generation Microarray Bioinformatics. Humana Press. ISBN 978-1-61779-399-8. 802(1). 401 s.

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• Wang, Junbai (2022). Integrated analysis of genome and epigenome to understanding cancer. BestPractice Nordic. ISSN 1902-7583.
• Zhou, Yufan; Gerrard, Diana L.; Wang, Junbai; Li, Tian; Yang, Yini & Fritz, Andrew J. [Vis alle 13 forfattere av denne artikkelen] (2020). Author Correction: Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance (Nature Communications, (2019), 10, 1, (1522), 10.1038/s41467-019-09320-9). Nature Communications. ISSN 2041-1723. 11(1). doi: 10.1038/s41467-020-15789-6.
• Li, Xiaoran; Zhong, Yali; Lu, Jie; Axcrona, Karol; Eide, Lars & Syljuåsen, Randi G. [Vis alle 13 forfattere av denne artikkelen] (2017). Correction: MtDNA depleted PC3 cells exhibit Warburg effect and cancer stem cell features. OncoTarget. ISSN 1949-2553. 8(4), s. 7208–7213. doi: 10.18632/oncotarget.14800.
• Shen, Bairong; Ma, Jian; Wang, Jiajun & Wang, Junbai (2014). Biomedical informatics and computational biology for high-throughput data analysis. Scientific World Journal. ISSN 1537-744X. 2014. doi: 10.1155/2014/398181.
• Wang, Junbai; Nygaard, Vegard; Smith-Sørensen, Birgitte; Hovig, Eivind & Myklebost, M. (2002). MARRAY:analysing single, replicated or reversed microarray experiments. Bioinformatics. ISSN 1367-4803. 8, s. 1139–1140.

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