Jukka Corander
Professor
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Probabilistisk inferens laboratorium

English version of this page
Mobiltelefon
+47 48049047
Brukernavn
Besøksadresse
Sognsvannsveien 9
Domus Medica
0372 Oslo
Postadresse
Postboks 1122 Blindern
0317 Oslo
Publikasjoner
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van Hal, Sebastiaan J; Willems, Rob J L; Gouliouris, Theodore; Ballard, Susan A; Coque, Teresa M & Hammerum, Anette M [Vis alle 16 forfattere av denne artikkelen] (2022). The interplay between community and hospital Enterococcus faecium clones within health-care settings: a genomic analysis. Lancet Microbe. ISSN 2666-5247. 3(2), s. e133–e141. doi: 10.1016/S2666-5247%2821%2900236-6.
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Mallawaarachchi, Sudaraka; Tonkin-Hill, Gerry; Croucher, Nicholas J.; Turner, Paul; Speed, Doug & Corander, Jukka [Vis alle 7 forfattere av denne artikkelen] (2022). Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae. NAR Genomics and Bioinformatics. ISSN 2631-9268. 4(1). doi: 10.1093/nargab/lqac011.
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Corander, Jukka; Remes, Ulpu Maria Vilhelmiina & Koski, Timo (2021). On the Jensen-Shannon divergence and the variation distance for categorical probability distributions. Kybernetika (Praha). ISSN 0023-5954. 57(6), s. 879–907. doi: 10.14736/kyb-2021-6-0879.
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Gladstone, Rebecca Ashley; Siira, Lotta; Brynildsrud, Ola Brønstad; Vestrheim, Didrik Frimann; Turner, Paul & Clarke, S.C. [Vis alle 21 forfattere av denne artikkelen] (2021). International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease. Vaccine. ISSN 0264-410X. 40(7), s. 1054–1060. doi: 10.1016/j.vaccine.2021.10.046. Fulltekst i vitenarkiv Vis sammendrag
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Mäklin, Tommi; Kallonen, Teemu; David, Sophia; Boinett, Christine J.; Pascoe, Ben & Meric, Guillaume [Vis alle 13 forfattere av denne artikkelen] (2021). High-resolution sweep metagenomics using fast probabilistic inference [version 1; peer review: 1 approved, 1 approved with reservations]. Wellcome Open Research. ISSN 2398-502X. 5(14). doi: 10.12688/WELLCOMEOPENRES.15639.2. Fulltekst i vitenarkiv
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Biffignandi, Gherard Batisti; Gibbon, Marjorie J.; Corbella, Marta; Thorpe, Harry Arthur Frank Wright; Merla, Cristina & Castelli, Michele [Vis alle 13 forfattere av denne artikkelen] (2021). Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae. G3: Genes, Genomes, Genetics. ISSN 2160-1836. 11(2). doi: 10.1093/g3journal/jkab019. Fulltekst i vitenarkiv
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Horesh, Gal; Blackwell, Grace A.; Tonkin-Hill, Gerry; Corander, Jukka; Heinz, Eva & Thomson, Nicholas R. (2021). A comprehensive and high-quality collection of escherichia coli genomes and their genes. Microbial Genomics. ISSN 2057-5858. 7(2), s. 1–15. doi: 10.1099/mgen.0.000499. Fulltekst i vitenarkiv
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Wee, Bryan A.; Alves, Joana; Lindsay, Diane S. J.; Klatt, Ann-Brit; Sargison, Fiona A. & Cameron, Ross L. [Vis alle 13 forfattere av denne artikkelen] (2021). Population analysis of Legionella pneumophila reveals a basis for resistance to complement-mediated killing. Nature Communications. ISSN 2041-1723. 12(1). doi: 10.1038/s41467-021-27478-z. Fulltekst i vitenarkiv
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Horesh, Gal; Taylor-Brown, Alyce; McGimpsey, Stephanie; Lassalle, Florent; Corander, Jukka & Heinz, Eva [Vis alle 7 forfattere av denne artikkelen] (2021). Different evolutionary trends form the twilight zone of the bacterial pan-genome. Microbial Genomics. ISSN 2057-5858. 7(9). doi: 10.1099/MGEN.0.000670. Fulltekst i vitenarkiv
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Gibbon, Marjorie J.; Couto, Natacha; David, Sophia; Barden, Ruth; Standerwick, Richard & Jagadeesan, Kishore Kumar [Vis alle 17 forfattere av denne artikkelen] (2021). A high prevalence of bla OXA-48 in Klebsiella (Raoultella) ornithinolytica and related species in hospital wastewater in South West England. Microbial Genomics. ISSN 2057-5858. 7(3). doi: 10.1099/mgen.0.000509. Fulltekst i vitenarkiv
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Kantele, Anu; Kuenzli, Esther; Dunn, Steven; Dance, David A.B.; Newton, Paul N. & Davong, Viengmon [Vis alle 14 forfattere av denne artikkelen] (2021). Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study. Lancet Microbe. ISSN 2666-5247. 2(4), s. e151–e158. doi: 10.1016/S2666-5247%2820%2930224-X. Fulltekst i vitenarkiv
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Alonso, Sergio Arredondo; Pöntinen, Anna Kaarina; Cleon, Francois Pierre Alexandre; Gladstone, Rebecca Ashley; Schürch, Anita C. & Johnsen, Pål Jarle [Vis alle 8 forfattere av denne artikkelen] (2021). A high-throughput multiplexing and selection strategy to complete bacterial genomes. GigaScience. ISSN 2047-217X. 10(12), s. 1–13. doi: 10.1093/gigascience/giab079. Fulltekst i vitenarkiv
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Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Samuelsen, Ørjan; Hegstad, Kristin & Mäkinen, Veli [Vis alle 9 forfattere av denne artikkelen] (2021). Bacterial genomic epidemiology with mixed samples. Microbial Genomics. ISSN 2057-5858. 7(11), s. 1–18. doi: 10.1099/MGEN.0.000691. Fulltekst i vitenarkiv
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Chewapreecha, Claire; Pensar, Johan; Chattagul, Supaksorn; Pesonen, Maiju; Sangphukieo, Apiwat & Boonklang, Phumrapee [Vis alle 18 forfattere av denne artikkelen] (2021). Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 39(1). doi: 10.1093/molbev/msab306. Fulltekst i vitenarkiv
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Suotsalo, Kimmo; Xu, Yingying; Corander, Jukka & Pensar, Johan (2021). High-dimensional structure learning of sparse vector autoregressive models using fractional marginal pseudo-likelihood. Statistics and computing. ISSN 0960-3174. 31(73). doi: 10.1007/s11222-021-10049-z. Fulltekst i vitenarkiv
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Pöntinen, Anna Kaarina; Top, Janetta; Alonso, Sergio Arredondo; Tonkin-Hill, Gerry; Freitas, Ana R. & Novais, Carla [Vis alle 21 forfattere av denne artikkelen] (2021). Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era. Nature Communications. ISSN 2041-1723. 12. doi: 10.1038/s41467-021-21749-5. Fulltekst i vitenarkiv
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Calland, Jessica K.; Pascoe, Ben; Bayliss, Sion; Mourkas, Evangelos; Berthenet, Elvire & Thorpe, Harry Arthur Frank Wright [Vis alle 12 forfattere av denne artikkelen] (2021). Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages. PLoS Genetics. ISSN 1553-7390. 17(9). doi: 10.1371/journal.pgen.1009829. Fulltekst i vitenarkiv
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MacAlasdair, Neil; Pesonen, Maiju; Brynildsrud, Ola Brønstad; Eldholm, Vegard; Kristiansen, Paul Arne & Corander, Jukka [Vis alle 8 forfattere av denne artikkelen] (2021). The effect of recombination on the evolution of a population of Neisseria meningitidis. Genome Research. ISSN 1088-9051. 31(7), s. 1258–1268. doi: 10.1101/gr.264465.120. Fulltekst i vitenarkiv
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Mageiros, Leonardos; Meric, Guillaume; Bayliss, Sion; Pensar, Johan; Pascoe, Ben & Mourkas, Evangelos [Vis alle 19 forfattere av denne artikkelen] (2021). Genome evolution and the emergence of pathogenicity in avian Escherichia coli. Nature Communications. ISSN 2041-1723. 12(1). doi: 10.1038/s41467-021-20988-w. Fulltekst i vitenarkiv
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van Hal, Sebastiaan J.; Willems, Rob J.L.; Gouliouris, Theodore; Ballard, Susan A.; Coque, Teresa M. & Hammerum, Anette M. [Vis alle 21 forfattere av denne artikkelen] (2021). The global dissemination of hospital clones of Enterococcus faecium. Genome Medicine. ISSN 1756-994X. 13(52). doi: 10.1186/s13073-021-00868-0. Fulltekst i vitenarkiv
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Gladstone, Rebecca Ashley; McNally, Alan; Pöntinen, Anna Kaarina; Tonkin-Hill, Gerry; Lees, John A. & Skytén, Kusti Onni [Vis alle 29 forfattere av denne artikkelen] (2021). Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002–17: a nationwide, longitudinal, microbial population genomic study. Lancet Microbe. ISSN 2666-5247. 2(7), s. e331–e341. doi: 10.1016/S2666-5247%2821%2900031-8. Fulltekst i vitenarkiv
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Alonso, Sergio Arredondo; Top, Janetta; Corander, Jukka; Willems, Rob J. L. & Schürch, Anita C. (2021). Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals. Genome Medicine. ISSN 1756-994X. 13(1), s. 1–18. doi: 10.1186/s13073-020-00825-3. Fulltekst i vitenarkiv
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Mai, The Tien; Turner, Paul & Corander, Jukka (2021). Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting. BMC Bioinformatics. ISSN 1471-2105. 22(1). doi: 10.1186/s12859-021-04079-7. Fulltekst i vitenarkiv
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Harrow, Gabrielle L.; Lees, John A.; Hanage, William P.; Lipsitch, Marc; Corander, Jukka & Colijn, Caroline [Vis alle 7 forfattere av denne artikkelen] (2021). Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures. The ISME Journal. ISSN 1751-7362. 15, s. 1523–1538. doi: 10.1038/s41396-020-00867-w. Fulltekst i vitenarkiv
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Aalto-Araneda, Mariella; Pöntinen, Anna; Pesonen, Maiju; Corander, Jukka; Markkula, Annukka & Tasara, Taurai [Vis alle 8 forfattere av denne artikkelen] (2020). Strain Variability of Listeria monocytogenes under NaCl Stress Elucidated by a High-Throughput Microbial Growth Data Assembly and Analysis Protocol. Applied and Environmental Microbiology. ISSN 0099-2240. 86(6). doi: 10.1128/AEM.02378-19.
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Top, Janetta; Arredondo-Alonso, Sergio; Schürch, Anita C.; Puranen, Santeri; Pesonen, Maiju & Pensar, Johan [Vis alle 8 forfattere av denne artikkelen] (2020). Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium. Microbial Genomics. ISSN 2057-5858. 6(12), s. 1–8. doi: 10.1099/mgen.0.000488. Fulltekst i vitenarkiv
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Tonkin-Hill, Gerry; MacAlasdair, Neil; Ruis, Christopher; Weimann, Aaron; Horesh, Gal & Lees, John A. [Vis alle 14 forfattere av denne artikkelen] (2020). Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome Biology. ISSN 1465-6906. 21, s. 1–21. doi: 10.1186/s13059-020-02090-4. Fulltekst i vitenarkiv
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Azarian, Taj; Martinez, Pamela P.; Arnold, Brian; Qiu, Xueting; Grant, Lindsay R. & Corander, Jukka [Vis alle 16 forfattere av denne artikkelen] (2020). Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae. PLoS Biology. ISSN 1544-9173. 18(10). doi: 10.1371/journal.pbio.3000878. Fulltekst i vitenarkiv
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Arredondo-Alonso, Sergio; Top, Janetta; McNally, Alan; Puranen, Santeri; Pesonen, Maiju & Pensar, Johan [Vis alle 14 forfattere av denne artikkelen] (2020). Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium. mBio. ISSN 2161-2129. 11(1). doi: 10.1128/mBio.03284-19. Fulltekst i vitenarkiv
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Colijn, Caroline; Corander, Jukka & Croucher, Nicholas J. (2020). Designing ecologically optimized pneumococcal vaccines using population genomics. Nature Microbiology. ISSN 2058-5276. 5(3), s. 473–485. doi: 10.1038/s41564-019-0651-y.
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Arnold, Brian; Sohail, Mashaal; Wadsworth, Crista; Corander, Jukka; Hanage, William P. & Sunyaev, Shamil R. [Vis alle 7 forfattere av denne artikkelen] (2020). Fine-Scale Haplotype Structure Reveals Strong Signatures of Positive Selection in a Recombining Bacterial Pathogen. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 37(2), s. 417–428. doi: 10.1093/molbev/msz225.
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Pensar, Johan; Xu, Yingying; Puranen, Juha Santeri; Pesonen, Maiju; Kabashima, Yoshiyuki & Corander, Jukka (2020). High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study. Computational Statistics & Data Analysis. ISSN 0167-9473. 141, s. 62–76. doi: 10.1016/j.csda.2019.06.012. Fulltekst i vitenarkiv
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Schaufler, Katharina; Semmler, Torsten; Wieler, Lothar H.; Trott, Darren J.; Pitout, Johann & Peirano, Gisele [Vis alle 19 forfattere av denne artikkelen] (2019). Genomic and functional analysis of emerging virulent and multidrug-resistant Escherichia coli lineage sequence type 648. Antimicrobial Agents and Chemotherapy. ISSN 0066-4804. 63:e00243-19(6), s. 1–12. doi: 10.1128/AAC.00243-19.
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Elbers, Jean P; Rogers, Mark F; Perelman, Polina L; Proskuryakova, Anastasia A; Serdyukova, Natalia A & Johnson, Warren E. [Vis alle 10 forfattere av denne artikkelen] (2019). Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary. Molecular Ecology Resources. ISSN 1755-098X. 19(4), s. 1015–1026. doi: 10.1111/1755-0998.13020. Fulltekst i vitenarkiv
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Léon-Sampedro, Ricardo; del Campo, Rosa; Rodriguez-Baños, Mercedes; Lanza, Val F.; Pozuelo, María José & Francés-Cuesta, Carlos [Vis alle 15 forfattere av denne artikkelen] (2019). Phylogenomics of Enterococcus faecalis from wild birds: new insights into host-associated differences in core and accessory genomes of the species. Environmental Microbiology. ISSN 1462-2912. 21(8), s. 3046–3062. doi: 10.1111/1462-2920.14702.
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Lintusaari, Jarno; Blomstedt, Paul; Rose, Brittany; Sivula, Tuomas; Gutmann, Michael U. & Kaski, Samuel [Vis alle 7 forfattere av denne artikkelen] (2019). Resolving outbreak dynamics using approximate bayesian computation for stochastic birth-death models. Wellcome Open Research. ISSN 2398-502X. 4(14). doi: 10.12688/wellcomeopenres.15048.2. Fulltekst i vitenarkiv
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Pensar, Johan; Puranen, Santeri; Arnold, Brian; MacAlasdair, Neil; Kuronen, Juri & Tonkin-Hill, Gerry [Vis alle 17 forfattere av denne artikkelen] (2019). Genome-wide epistasis and co-selection study using mutual information. Nucleic Acids Research (NAR). ISSN 0305-1048. 47(18), s. 1–14. doi: 10.1093/nar/gkz656. Fulltekst i vitenarkiv
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Merla, Cristina; Rodrigues, Carla; Passet, Virginie; Corbella, Marta; Thorpe, Harry A & Kallonen, Teemu [Vis alle 13 forfattere av denne artikkelen] (2019). Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov. Frontiers in Microbiology. ISSN 1664-302X. 10(2360), s. 1–9. doi: 10.3389/fmicb.2019.02360. Fulltekst i vitenarkiv
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Tonkin-Hill, Gerry; Lees, John A; Bentley, Stephen D; Frost, Simon DW & Corander, Jukka (2019). Fast hierarchical Bayesian analysis of population structure. Nucleic Acids Research (NAR). ISSN 0305-1048. 47(11), s. 5539–5549. doi: 10.1093/nar/gkz361. Fulltekst i vitenarkiv
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Sanchez-Buso, Leonor; Golparian, Daniel; Corander, Jukka; Grad, Yonatan H.; Ohnishi, Makoto & Flemming, Rebecca [Vis alle 10 forfattere av denne artikkelen] (2019). The impact of antimicrobials on gonococcal evolution. Nature Microbiology. ISSN 2058-5276. doi: 10.1038/s41564-019-0501-y.
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Lu, Yao; Corander, Jukka & Yang, Zhirong (2019). Doubly Stochastic Neighbor Embedding on Spheres. Pattern Recognition Letters. ISSN 0167-8655. 128, s. 100–106. doi: 10.1016/j.patrec.2019.08.026. Fulltekst i vitenarkiv
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Chiner-Oms, Álvaro; Sanchez-Buso, Leonor; Corander, Jukka; Gagneux, Sébastien; Harris, Simon R & Young, D [Vis alle 8 forfattere av denne artikkelen] (2019). Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex. Science Advances. ISSN 2375-2548. 5(6). doi: 10.1126/sciadv.aaw3307. Fulltekst i vitenarkiv
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Corander, Jukka; Hyttinen, Antti; Kontinen, Juha; Pensar, Johan & Väänänen, Jouko (2019). A logical approach to context-specific independence. Annals of Pure and Applied Logic. ISSN 0168-0072. 170(9), s. 975–992. doi: 10.1016/j.apal.2019.04.004.
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Gladstone, Rebecca A; Lo, Stephanie W; Lees, John A; Croucher, Nicholas J.; van Tonder, Andries J. & Corander, Jukka [Vis alle 26 forfattere av denne artikkelen] (2019). International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBioMedicine. ISSN 2352-3964. 43, s. 338–346. doi: 10.1016/j.ebiom.2019.04.021. Fulltekst i vitenarkiv
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Gouliouris, Theodore; Raven, Kathy E; Moradigaravand, Danesh; Ludden, Catherine; Coll, Francesc & Blane, Beth [Vis alle 13 forfattere av denne artikkelen] (2019). Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment. Genome Research. ISSN 1088-9051. 29(4), s. 626–634. doi: 10.1101/gr.232629.117. Fulltekst i vitenarkiv
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Cremers, Amelieke J. H.; Mobegi, Fredrick M.; Van Der Gaast-De Jongh, Christa; Van Weert, Michelle; Van Opzeeland, Fred J. & Vehkala, Minna [Vis alle 17 forfattere av denne artikkelen] (2019). The contribution of genetic variation of streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease. Clinical Infectious Diseases. ISSN 1058-4838. 68(1), s. 61–69. doi: 10.1093/cid/ciy417.
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Lees, John A; Harris, Simon R; Tonkin-Hill, Gerry; Gladstone, Rebecca A; Lo, Stephanie W & Weiser, Jeffrey N [Vis alle 9 forfattere av denne artikkelen] (2019). Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome Research. ISSN 1088-9051. 29(2), s. 304–316. doi: 10.1101/gr.241455.118. Fulltekst i vitenarkiv
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McNally, Alan; Kallonen, Teemu; Connor, Christopher; Abudahab, Khalil; Aanensen, David M. & Horner, Carolyne S [Vis alle 10 forfattere av denne artikkelen] (2019). Diversification of colonization factors in a multidrug-resistant escherichia coli lineage evolving under negative frequency- dependent selection. mBio. ISSN 2161-2129. 10(2). doi: 10.1128/mBio.00644-19. Fulltekst i vitenarkiv
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Wailan, Alexander M.; Coll, Francesc; Heinz, Eva; Tonkin-Hill, Gerry; Corander, Jukka & Feasey, Nicholas A. [Vis alle 7 forfattere av denne artikkelen] (2019). rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree. Microbial Genomics. ISSN 2057-5858. 5(4). doi: 10.1099/mgen.0.000264. Fulltekst i vitenarkiv
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Colclough, Abigail; Corander, Jukka; Sheppard, Samuel K.; Bayliss, S. C. & Vos, Michiel (2019). Patterns of cross-resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials. Evolutionary Applications. ISSN 1752-4571. 12(5), s. 878–887. doi: 10.1111/eva.12762. Fulltekst i vitenarkiv
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Tadei, Alessandro; Pensar, Johan; Corander, Jukka; Finnilä, Katarina; Santtila, Pekka & Antfolk, Jan (2019). A Bayesian Decision-Support Tool for Child Sexual Abuse Assessment and Investigation. Sexual abuse. A Journal of Research and Treatment. ISSN 1079-0632. 31(4), s. 374–396. doi: 10.1177/1079063217732791.
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Todorovic, Milica; Gutmann, Michael U.; Corander, Jukka & Rinke, Patrick (2019). Bayesian inference of atomistic structure in functional materials. npj Computational Materials. ISSN 2057-3960. 5(1). doi: 10.1038/s41524-019-0175-2. Fulltekst i vitenarkiv
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Kachroo, Priyanka; Eraso, Jesus M.; Beres, Stephen B.; Olsen, Randall J.; Zhu, Luchang & Nasser, Waleed [Vis alle 31 forfattere av denne artikkelen] (2019). Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis. Nature Genetics. ISSN 1061-4036. 51(3), s. 548–559. doi: 10.1038/s41588-018-0343-1.
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Abudahab, Khalil; Prada, Joaquín; Yang, Zhirong; Bentley, Stephen; Croucher, Nicholas & Corander, Jukka [Vis alle 7 forfattere av denne artikkelen] (2019). PANINI: Pangenome Neighbour Identification for Bacterial Populations. Microbial Genomics. ISSN 2057-5858. 5(4). doi: 10.1099/mgen.0.000220. Fulltekst i vitenarkiv
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Tonkin-Hill, Gerry; Lees, John A.; Bentley, Stephen D.; Frost, Simon D. W. & Corander, Jukka (2018). RhierBAPs: An R implementation of the population clustering algorithm hierbaps [version 1; referees: 2 approved]. Wellcome Open Research. ISSN 2398-502X. 3, s. 1–10. doi: 10.12688/wellcomeopenres.14694.1.
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Puranen, Santeri; Pesonen, Maiju; Pensar, Johan; Xu, Ying Ying; Lees, John A. & Bentley, Stephen D. [Vis alle 8 forfattere av denne artikkelen] (2018). SuperDCA for genome-wide epistasis analysis. Microbial Genomics. ISSN 2057-5858. 4(6), s. 1–12. doi: 10.1099/mgen.0.000184.
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Meric, Guillaume; Mageiros, Leonardos; Pensar, Johan; Laabei, Maisem; Yahara, Koji & Pascoe, Ben [Vis alle 25 forfattere av denne artikkelen] (2018). Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. Nature Communications. ISSN 2041-1723. 9(1). doi: 10.1038/s41467-018-07368-7. Fulltekst i vitenarkiv
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Arredondo-Alonso, Sergio; Rogers, Malbert R.C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta & Corander, Jukka [Vis alle 8 forfattere av denne artikkelen] (2018). mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species. Microbial Genomics. ISSN 2057-5858. 4(11), s. 1–15. doi: 10.1099/mgen.0.000224. Fulltekst i vitenarkiv
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Lees, John A; Galardini, Marco; Bentley, Stephen D; Weiser, Jeffrey N & Corander, Jukka (2018). pyseer: a comprehensive tool for microbial pangenome-wide association studies. Bioinformatics. ISSN 1367-4803. 34(24), s. 4310–4312. doi: 10.1093/bioinformatics/bty539. Fulltekst i vitenarkiv
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Top, Janetta; Sinnige, Jan C.; Brouwer, Ellen C.; Werner, Guido; Corander, Jukka & Severin, Juliëtte A. [Vis alle 11 forfattere av denne artikkelen] (2018). Identification of a novel genomic island associated with vand-type vancomycin resistance in six Dutch vancomycin-resistant enterococcus faecium isolates. Antimicrobial Agents and Chemotherapy. ISSN 0066-4804. 62:e01793(3), s. 1–7. doi: 10.1128/AAC.01793-17.
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Richardson, Emily J; Bacigalupe, Rodrigo; Harrison, Ewan M; Weinert, Lucy A.; Lycett, Samantha & Vrieling, Manouk [Vis alle 20 forfattere av denne artikkelen] (2018). Gene exchange drives the ecological success of a multi-host bacterial pathogen. Nature Ecology and Evolution. ISSN 2397-334X. 2(9), s. 1468–1478. doi: 10.1038/s41559-018-0617-0. Fulltekst i vitenarkiv
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Flahou, Bram; Rossi, Mirko; Bakker, Jaco; Langermans, Jan AM; Heuvelman, Edwin & Solnick, Jay V [Vis alle 33 forfattere av denne artikkelen] (2018). Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs. The ISME Journal. ISSN 1751-7362. 12(1), s. 77–86. doi: 10.1038/ismej.2017.145.
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Gouliouris, Theodore; Raven, Kathy E; Ludden, Catherine; Blane, Beth; Corander, Jukka & Horner, Carolyne S [Vis alle 15 forfattere av denne artikkelen] (2018). Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom. mBio. ISSN 2161-2129. 9(6). doi: 10.1128/mBio.01780-18. Fulltekst i vitenarkiv
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Lin, Xiaoxi B.; Wang, Tuo; Stothard, Paul; Corander, Jukka; Wang, Jun & Baines, John F. [Vis alle 16 forfattere av denne artikkelen] (2018). The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract. The ISME Journal. ISSN 1751-7362. 12(11), s. 2770–2784. doi: 10.1038/s41396-018-0211-0.
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Arnold, Brian; Gutmann, Michael U.; Grad, Yonatan H.; Sheppard, Samuel K.; Corander, Jukka & Lipsitch, Marc [Vis alle 7 forfattere av denne artikkelen] (2018). Weak epistasis may drive adaptation in recombining bacteria. Genetics. ISSN 0016-6731. 208(3), s. 1247–1260. doi: 10.1534/genetics.117.300662. Fulltekst i vitenarkiv
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Lintusaari, Jarno; Vuollekoski, Henri; Kangasraasio, Antti; Skyten, Kusti; Jarvenpaa, Marko & Marttinen, Pekka [Vis alle 10 forfattere av denne artikkelen] (2018). ELFI: Engine for Likelihood-Free Inference . Journal of machine learning research. ISSN 1532-4435. 19(16), s. 1–7. Fulltekst i vitenarkiv
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Pessia, Alberto & Corander, Jukka (2018). Kpax3: Bayesian bi-clustering of large sequence datasets. Bioinformatics. ISSN 1367-4803. 34(12), s. 2132–2133. doi: 10.1093/bioinformatics/bty056. Fulltekst i vitenarkiv
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Meric, Guillaume; McNally, Alan; Pessia, Alberto; Mourkas, Evangelos; Pascoe, Ben & Mageiros, Leonardos [Vis alle 9 forfattere av denne artikkelen] (2018). Convergent amino acid signatures in polyphyletic campylobacter jejuni subpopulations suggest human niche tropism. Genome Biology and Evolution (GBE). ISSN 1759-6653. 10(3), s. 763–774. doi: 10.1093/gbe/evy026. Fulltekst i vitenarkiv
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Pensar, Johan; Kohonen, J & Corander, Jukka (2018). Exact Bayesian learning of Partition Directed Acyclic Graphs. Journal of Physics: Conference Series (JPCS). ISSN 1742-6588. 1036(1), s. 1–12. doi: 10.1088/1742-6596/1036/1/012017. Fulltekst i vitenarkiv
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Sipola, Aleksi; Marttinen, Pekka & Corander, Jukka (2018). Bacmeta: simulator for genomic evolution in bacterial metapopulations . Bioinformatics. ISSN 1367-4803. 34(13), s. 2308–2310. doi: 10.1093/bioinformatics/bty093. Fulltekst i vitenarkiv
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Xu, Yingying; Puranen, Santeri; Corander, Jukka & Kabashima, Yoshiyuki (2018). Inverse finite-size scaling for high-dimensional significance analysis. Physical review. E. ISSN 2470-0045. 97(6). doi: 10.1103/PhysRevE.97.062112. Fulltekst i vitenarkiv
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Van den Bunt, G.; Top, J.; Hordijk, J.; De Greeff, S.C.; Mughini-Gras, L. & Corander, Jukka [Vis alle 10 forfattere av denne artikkelen] (2018). Intestinal carriage of ampicillin- and vancomycin-resistant Enterococcus faecium in humans, dogs and cats in the Netherlands. Journal of Antimicrobial Chemotherapy. ISSN 0305-7453. 73(3), s. 607–614. doi: 10.1093/jac/dkx455.
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Smet, Annemieke; Yahara, Koji; Rossi, Mirko; Tay, Alfred; Backert, Steffen & Armin, Ensser [Vis alle 11 forfattere av denne artikkelen] (2018). Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence. The ISME Journal. ISSN 1751-7362. s. 1–14. doi: 10.1038/s41396-018-0199-5.
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Reiseter, Silje; Gunnarsson, Ragnar; Corander, Jukka; Haydon, Joanna; Samersaw-Lund, May Brit & Aaløkken, Trond Mogens [Vis alle 9 forfattere av denne artikkelen] (2017). Disease evolution in mixed connective tissue disease: Results from a long-term nationwide prospective cohort study. Arthritis Research & Therapy. ISSN 1478-6354. 19(1). doi: 10.1186/s13075-017-1494-7. Fulltekst i vitenarkiv
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Kallonen, Teemu Ville Sakari; Brodrick, Hayley J; Harris, Simon R.; Corander, Jukka; Brown, Nicholas M & Martin, Veronique [Vis alle 8 forfattere av denne artikkelen] (2017). Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. Genome Research. ISSN 1088-9051. 27(8), s. 1437–1449. doi: 10.1101/gr.216606.116.
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Mohandesan, Elmira; Fitak, Robert R; Corander, Jukka; Yadamsuren, Adiya; Chuluunbat, Battsetseg & Abdelhadi, Omer [Vis alle 12 forfattere av denne artikkelen] (2017). Mitogenome Sequencing in the Genus Camelus Reveals Evidence for Purifying Selection and Long-term Divergence between Wild and Domestic Bactrian Camels. Scientific Reports. ISSN 2045-2322. 7(1). doi: 10.1038/s41598-017-08995-8.
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Wei, Lu; Pitaval, Renaud-Alexandre; Corander, Jukka & Tirkkonen, Olav (2017). From random matrix theory to coding theory: Volume of a metric ball in unitary group. IEEE Transactions on Information Theory. ISSN 0018-9448. 63(5), s. 2814–2821. doi: 10.1109/TIT.2017.2681900.
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Corander, Jukka; Fraser, Christophe; Gutmann, Michael U.; Arnold, Brian; Hanage, William P & Bentley, Stephen D [Vis alle 8 forfattere av denne artikkelen] (2017). Frequency-dependent selection in vaccine-associated pneumococcal population dynamics. Nature Ecology and Evolution. ISSN 2397-334X. 1(12), s. 1950–1960. doi: 10.1038/s41559-017-0337-x.
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Mostowy, Rafal; Croucher, Nicholas J.; Andam, Cheryl P; Corander, Jukka; Hanage, William P & Marttinen, Pekka (2017). Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 34(5), s. 1167–1182. doi: 10.1093/molbev/msx066.
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Murray, Susan; Pascoe, Ben; Meric, Guillaume; Mageiros, Leonardos; Yahara, Koji & Hitchings, Matthew D [Vis alle 20 forfattere av denne artikkelen] (2017). Recombination-mediated host adaptation by avian staphylococcus aureus. Genome Biology and Evolution (GBE). ISSN 1759-6653. 9(4), s. 830–842. doi: 10.1093/gbe/evx037.
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Pensar, Johan; Nyman, Henrik; Niiranen, Juha & Corander, Jukka (2017). Marginal pseudo-likelihood learning of discrete Markov network structures. Bayesian Analysis. ISSN 1936-0975. 12(4), s. 1195–1215. doi: 10.1214/16-BA1032.
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Tietavainen, A; Gutmann, Michael U.; Keski-Vakkuri, Esko; Corander, Jukka & Hæggstrom, Edward (2017). Bayesian inference of physiologically meaningful parameters from body sway measurements. Scientific Reports. ISSN 2045-2322. 7(1). doi: 10.1038/s41598-017-02372-1.
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Pensar, Johan; Nyman, Henrik & Corander, Jukka (2017). Structure Learning of Contextual Markov Networks using Marginal Pseudo-likelihood. Scandinavian Journal of Statistics. ISSN 0303-6898. 44(2), s. 455–479. doi: 10.1111/sjos.12260.
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Duplouy, Anne; Wong, Swee C; Corander, Jukka; Lehtonen, Rainer & Hanski, Ilkka (2017). Genetic effects on life-history traits in the Glanville fritillary butterfly. PeerJ. ISSN 2167-8359. 2017(5). doi: 10.7717/peerj.3371.
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Skwark, Marcin J.; Croucher, Nicholas J.; Puranen, Santeri; Chewapreecha, Claire; Pesonen, Maiju & Xu, Ying Ying [Vis alle 14 forfattere av denne artikkelen] (2017). Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. PLoS Genetics. ISSN 1553-7390. 13:e1006508(2), s. 1–24. doi: 10.1371/journal.pgen.1006508.
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Lintusaari, Jarno; Gutmann, Michael U.; Dutta, Ritabrata; Kaski, Samuel & Corander, Jukka (2017). Fundamentals and recent developments in approximate Bayesian computation. Systematic Biology. ISSN 1063-5157. 66(1), s. e66–e82. doi: 10.1093/sysbio/syw077.
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Congo-Ouedraogo, M.; Poncin, T.; Sangaré, L.; Mérimèche, M.; Braille, A. & Jacquier, H. [Vis alle 13 forfattere av denne artikkelen] (2022). Genomic and antimicrobial resistance analyses of Neisseria gonorrhoeae isolates, Burkina Faso, 2018–2019. Journal of the European Academy of Dermatology and Venereology. ISSN 0926-9959. doi: 10.1111/jdv.18037.
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Kloos, Julia Maria; Jänisch, Lea; Pöntinen, Anna Kaarina; Samuelsen, Ørjan; Johnsen, Pål Jarle & Corander, Jukka [Vis alle 7 forfattere av denne artikkelen] (2022). Different metabolic proficiency among dominant ExPEC lineages.
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Mageiros, Leonardos; Meric, Guillaume; Bayliss, Sion; Pensar, Johan; Pascoe, Ben & Mourkas, Evangelos [Vis alle 19 forfattere av denne artikkelen] (2021). Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli (Nature Communications, (2021), 12, 1, (765), 10.1038/s41467-021-20988-w). Nature Communications. ISSN 2041-1723. 12(1). doi: 10.1038/s41467-021-22238-5.
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Corander, Jukka (2020). New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in Primates. mBio. ISSN 2161-2129. doi: 10.1128/mBio.03363-19.
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Corander, Jukka (2020). PYLFIRE: Python implementation of likelihood-free inference by ratio estimation. Wellcome Open Research. ISSN 2398-502X. doi: 10.12688/wellcomeopenres.15583.1.
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Corander, Jukka (2020). gplas: a comprehensive tool for plasmid analysis using short-read graphs. Bioinformatics. ISSN 1367-4803. doi: 10.1093/bioinformatics/btaa233.
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Corander, Jukka (2020). Genomic signatures of domestication in Old World camels. Communications Biology. ISSN 2399-3642. doi: 10.1038/s42003-020-1039-5.
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Corander, Jukka (2020). Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies. BMC Genomics. ISSN 1471-2164. doi: 10.1186/s12864-020-06990-4.
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Corander, Jukka (2020). The binding mechanism of the virulence factor Streptococcus suis adhesin P subtype to globotetraosylceramide is associated with systemic disease. Journal of Biological Chemistry. ISSN 0021-9258. doi: 10.1074/jbc.RA120.014818.
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Corander, Jukka (2020). Likelihood-free inference by ratio estimation. Bayesian Analysis. ISSN 1936-0975. doi: 10.1214/20-BA1238.
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Corander, Jukka (2020). Adaptive Approximate Bayesian Computation tolerance selection. Bayesian Analysis. ISSN 1936-0975. doi: 10.1214/20-BA1211.
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Corander, Jukka (2020). Improved prediction of bacterial genotype-phenotype associations using interpretable pangenome-spanning regressions. mBio. ISSN 2161-2129. doi: 10.1128/mBio.01344-20.
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Arredondo-Alonso, Sergio; Rogers, Malbert R.C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta & Corander, Jukka [Vis alle 8 forfattere av denne artikkelen] (2019). Corrigendum: Mlplasmids: A user-friendly tool to predict plasmid-and chromosome-derived sequences for single species, (Microbial Genomics), (2018), 4, 10.1099/mgen.0.000224. Microbial Genomics. ISSN 2057-5858. 5(1). doi: 10.1099/mgen.0.000249.
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Smet, Annemieke; Yahara, Koji; Rossi, Mirko; Tay, Alfred; Backert, Steffen & Ensser, Armin [Vis alle 11 forfattere av denne artikkelen] (2019). Correction: Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (The ISME Journal, (2018), 12, 10, (2518-2531), 10.1038/s41396-018-0199-5). The ISME Journal. ISSN 1751-7362. doi: 10.1038/s41396-019-0380-5.
Publisert 11. apr. 2016 12:35
- Sist endret 13. jan. 2020 12:24